dbToTest <- Sys.getenv("DB_TO_TEST", "duckdb") copyCdm <- function(cdm) { if (dbToTest == "duckdb") { to <- CDMConnector::dbSource( con = duckdb::dbConnect(drv = duckdb::duckdb(dbdir = ":memory:")), writeSchema = c(schema = "main", prefix = "pp_test_") ) } else if (dbToTest == "sql server") { to <- CDMConnector::dbSource( con = DBI::dbConnect( odbc::odbc(), Driver = "ODBC Driver 18 for SQL Server", Server = Sys.getenv("CDM5_SQL_SERVER_SERVER"), Database = Sys.getenv("CDM5_SQL_SERVER_CDM_DATABASE"), UID = Sys.getenv("CDM5_SQL_SERVER_USER"), PWD = Sys.getenv("CDM5_SQL_SERVER_PASSWORD"), TrustServerCertificate = "yes", Port = 1433 ), writeSchema = c( schema = Sys.getenv("CDM5_SQL_SERVER_OHDSI_SCHEMA"), prefix = "pp_test_" ) ) } else if (dbToTest == "redshift") { to <- CDMConnector::dbSource( con = DBI::dbConnect( RPostgres::Redshift(), dbname = Sys.getenv("CDM5_REDSHIFT_DBNAME"), port = Sys.getenv("CDM5_REDSHIFT_PORT"), host = Sys.getenv("CDM5_REDSHIFT_HOST"), user = Sys.getenv("CDM5_REDSHIFT_USER"), password = Sys.getenv("CDM5_REDSHIFT_PASSWORD") ), writeSchema = c( schema = Sys.getenv("CDM5_REDSHIFT_SCRATCH_SCHEMA"), prefix = "pp_test_" ) ) } else if (dbToTest == "postgres") { # TODO } else if (dbToTest != "local") { cli::cli_abort(c(x = "Not supported dbToTest: {.pkg {dbToTest}}")) } if (dbToTest != "local") { cdm <- omopgenerics::insertCdmTo(cdm = cdm, to = to) } return(cdm) } dropCreatedTables <- function(cdm) { omopgenerics::dropSourceTable(cdm = cdm, name = dplyr::everything()) }