* using log directory ‘/srv/hornik/tmp/CRAN_pretest/PatientProfiles.Rcheck’
* using R Under development (unstable) (2025-02-26 r87827)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘PatientProfiles/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PatientProfiles’ version ‘1.3.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/7s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘PatientProfiles’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
  Missing dependency on R >= 4.1.0 because package code uses the pipe
  |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘addAge.Rd’ ‘addAgeQuery.Rd’ ‘addCategories.R’ ‘addCategories.Rd’
    ‘addCdmName.Rd’ ‘addCohortIntersect.R’ ‘addCohortIntersectCount.Rd’
    ‘addCohortIntersectDate.Rd’ ‘addCohortIntersectDays.Rd’
    ‘addCohortIntersectFlag.Rd’ ‘addCohortName.Rd’
    ‘addConceptIntersect.R’ ‘addConceptIntersectCount.Rd’
    ‘addConceptIntersectDate.Rd’ ‘addConceptIntersectDays.Rd’
    ‘addConceptIntersectField.Rd’ ‘addConceptIntersectFlag.Rd’
    ‘addDateOfBirth.Rd’ ‘addDateOfBirthQuery.Rd’ ‘addDeath.R’
    ‘addDeathDate.Rd’ ‘addDeathDays.Rd’ ‘addDeathFlag.Rd’
    ‘addDemographics.R’ ‘addDemographics.Rd’ ‘addDemographicsQuery.R’
    ‘addDemographicsQuery.Rd’ ‘addFutureObservation.Rd’
    ‘addFutureObservationQuery.Rd’ ‘addInObservation.Rd’
    ‘addInObservationQuery.Rd’ ‘addIntersect.R’
    ‘addObservationPeriodId.R’ ‘addObservationPeriodId.Rd’
    ‘addObservationPeriodIdQuery.Rd’ ‘addPriorObservation.Rd’
    ‘addPriorObservationQuery.Rd’ ‘addSex.Rd’ ‘addSexQuery.Rd’
    ‘addTableIntersect.R’ ‘addTableIntersectCount.Rd’
    ‘addTableIntersectDate.Rd’ ‘addTableIntersectDays.Rd’
    ‘addTableIntersectField.Rd’ ‘addTableIntersectFlag.Rd’
    ‘benchmarkPatientProfiles.R’ ‘checks.R’ ‘filterCohortId.R’
    ‘filterInObservation.R’ ‘formats.R’ ‘mockPatientProfiles.R’
    ‘summariseResult.R’ ‘summariseResult.Rd’ ‘utilities.R’
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [126s/69s] OK
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [125s/69s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [124s/119s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE