test_that("test that name argument works as expected", { skip_on_cran() # create simple cdm cdm <- mockPatientProfiles(con = connection(), writeSchema = writeSchema()) prefix <- CDMConnector::cdmWriteSchema(cdm) prefix <- prefix["prefix"] |> unname() # define the different functions funs <- list( function(x, name) { x |> addDemographics(name = name) }, function(x, name) { x |> addSex(name = name) }, function(x, name) { x |> addAge(name = name) }, function(x, name) { x |> addPriorObservation(name = name) }, function(x, name) { x |> addFutureObservation(name = name) }, function(x, name) { x |> addDateOfBirth(name = name) }, function(x, name) { x |> addInObservation(name = name) }, function(x, name) { x |> addDeathDate(name = name) }, function(x, name) { x |> addDeathDays(name = name) }, function(x, name) { x |> addDeathFlag(name = name) }, function(x, name) { x |> addCohortIntersectCount(targetCohortTable = "cohort2", name = name) }, function(x, name) { x |> addCohortIntersectFlag(targetCohortTable = "cohort2", name = name) }, function(x, name) { x |> addCohortIntersectDate(targetCohortTable = "cohort2", name = name) }, function(x, name) { x |> addCohortIntersectDays(targetCohortTable = "cohort2", name = name) }, # function(x, name) { # x |> addConceptIntersectDays(conceptSet = list(a = 1), name = name) # }, # function(x, name) { # x |> addConceptIntersectDate(conceptSet = list(a = 1), name = name) # }, # function(x, name) { # x |> addConceptIntersectFlag(conceptSet = list(a = 1), name = name) # }, # function(x, name) { # x |> addConceptIntersectCount(conceptSet = list(a = 1), name = name) # }, function(x, name) { x |> addTableIntersectCount(tableName = "drug_exposure", name = name) }, function(x, name) { x |> addTableIntersectFlag(tableName = "drug_exposure", name = name) }, function(x, name) { x |> addTableIntersectDate(tableName = "drug_exposure", name = name) }, function(x, name) { x |> addTableIntersectDays(tableName = "drug_exposure", name = name) }, function(x, name) { x |> addTableIntersectField( tableName = "drug_exposure", name = name, field = "drug_concept_id" ) } ) k <- 1 for (fun in funs) { # check NULL behavior initialTables <- readTables(cdm) x <- cdm$cohort1 |> fun(name = NULL) finalTables <- readTables(cdm) expect_identical(setdiff(initialTables, finalTables), character()) difference <- setdiff(finalTables, initialTables) expect_true(length(difference) == 1) expect_true(substr(difference, 1, 3) == "og_") # check permanent behavior name <- paste0("my_test_", k) k <- k + 1 initialTables <- readTables(cdm) x <- cdm$cohort1 |> fun(name = name) finalTables <- readTables(cdm) expect_identical(setdiff(initialTables, finalTables), character()) difference <- setdiff(finalTables, initialTables) expect_identical(difference, paste0(prefix, name)) } mockDisconnect(cdm) })