test_that("Test getData() from xlsx", { testLoaded <- getData(name = "14CARHU - Radiocarbon Dates of Helsinki University") %>% passOnErrorMsg() if (foundResource(testLoaded)) { expect_true(nrow(testLoaded) > 2000) expect_true(all( c( "14CARHU.dates.under.the.OASIS.database.v1.0.(21/10/2015)", "X2", "X3", "X4", "X5" ) %in% colnames(testLoaded) )) } }) test_that("Test getData() from csv if isOldROnWindows() machine", { # following tests show encryption issues with Windows if (isOldROnWindows()) { # error on old windows expect_error(getData(name = "Isotopic measurements in CSV format")) # error without specific encoding expect_error(getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";"))) # no error with windows encoding testLoaded <- getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";", fileEncoding = "windows-1252")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) # less rows on old windows testLoaded <- getData(name = "IsoMedIta Humans 21-12-22 - CSV", options = dataOptions(sep = ";")) if (foundResource(testLoaded)) expect_true(nrow(testLoaded) < 2000) } }) test_that("Test getData() from csv if newer Windows machine", { if (!isOldROnWindows() && Sys.info()["sysname"] == "Windows") { # no error without specific encoding testLoaded <- getData(name = "Isotopic measurements in CSV format") if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) testLoaded <- getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) # no error with windows encoding testLoaded <- getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";", fileEncoding = "windows-1252")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) # more rows if newer windows testLoaded <- getData(name = "IsoMedIta Humans 21-12-22 - CSV", options = dataOptions(sep = ";")) if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) } }) test_that("Test getData() from csv if linux or mac", { if (!Sys.info()["sysname"] == "Windows") { # linux or mac # no error without specific encoding testLoaded <- getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 2000) # less data with windows encoding testLoaded <- getData(name = "MAIA Humans CSV", options = dataOptions(sep = ";", fileEncoding = "windows-1252")) %>% passOnErrorMsg() if (foundResource(testLoaded)) { expect_true(nrow(testLoaded) > 700) expect_true(nrow(testLoaded) < 800) } } }) test_that("Test getData() from csv", { testLoaded <- getData(name = "CIMA Animals 29.05.2021 CSV", options = dataOptions(sep = ";")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 4000) testLoaded <- getData(name = "CIMA Plants 29.05.2021 CSV", options = dataOptions(sep = ";")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 100) testLoaded <- getData(name = "Zanadamu CSV format", options = dataOptions(fileEncoding = "ISO-8859-1")) %>% passOnErrorMsg() if (foundResource(testLoaded)) expect_true(nrow(testLoaded) > 200) # run only for TDD: # test random files to check if errors are caught # allResources <- getResources() # for (i in 1:10) { # testResource <- allResources[sample(nrow(allResources), 1), ] # getData(name = testResource[["name"]]) # } expect_error(getData(name = "Amalthea Bibliography 05.03.2021")) expect_error(getData(name = "Isotòpia Humans csv (19.09.2023)")) }) test_that("Test loadData()", { testResource <- getResources(fileType = "xlsx", network = "IsoMemo", pattern = "14carhu") testLoaded <- loadData(path = testResource[1, "url"], type = testResource[1, "format"]) expect_true(nrow(testLoaded) > 2000) expect_true(all( c( "14CARHU.dates.under.the.OASIS.database.v1.0.(21/10/2015)", "X2", "X3", "X4", "X5" ) %in% colnames(testLoaded) )) })