* using log directory 'd:/RCompile/CRANincoming/R-devel/PaLMr.Rcheck' * using R Under development (unstable) (2024-01-20 r85814 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'PaLMr/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'PaLMr' version '0.2.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'Li Yuan ' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'PaLMr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) palm.txt.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:66: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:76: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:78: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:89: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:90: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:96: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:97: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:98: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:99: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:100: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.Rd:110: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:78: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:89: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:90: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:91: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:97: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:98: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:99: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:100: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:101: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:110: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.explain.code.Rd:111: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:45: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:65: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:66: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:75: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:76: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:78: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:89: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:95: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:96: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:97: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:98: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:99: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:105: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.fix.grammar.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:65: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:66: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:67: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:75: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:76: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:77: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:78: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:79: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:89: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:95: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:96: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:97: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:98: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:99: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:105: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:106: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:107: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:108: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:109: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:115: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:116: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:117: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:118: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.get.reference.Rd:119: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:50: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:51: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:52: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:53: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:60: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:61: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:62: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:63: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:73: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:74: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:80: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:81: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:82: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:84: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:90: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:91: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:92: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:93: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:94: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:100: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:101: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:102: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:104: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:110: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:111: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:112: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:113: Lost braces in \itemize; meant \describe ? checkRd: (-1) palm.txt.optimize.code.Rd:114: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... OK * DONE Status: 1 NOTE