* using log directory ‘/srv/hornik/tmp/CRAN/PSIndependenceTest.Rcheck’ * using R Under development (unstable) (2023-09-05 r85079) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (11) GNU Fortran (Debian 13.2.0-2) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘PSIndependenceTest/DESCRIPTION’ ... OK * this is package ‘PSIndependenceTest’ version ‘0.0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Piotr Sulewski ’ New submission Possibly misspelled words in DESCRIPTION: Sulewski (8:206, 8:255, 8:308, 8:354) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PSIndependenceTest’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [11s/11s] OK Running ‘testthat.R’ [11s/11s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [57s/57s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘PSIndependenceTest.Rmd’ using rmarkdown Quitting from lines 222-224 [unnamed-chunk-19] (PSIndependenceTest.Rmd) Error: processing vignette ‘PSIndependenceTest.Rmd’ failed with diagnostics: missing value where TRUE/FALSE needed --- failed re-building ‘PSIndependenceTest.Rmd’ SUMMARY: processing the following file failed: ‘PSIndependenceTest.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] NOTE Found the following HTML validation problems: Lms2.cv.html:54:1 (Lms2.cv.Rd:18): Error: is not recognized! Lms2.cv.html:54:1 (Lms2.cv.Rd:18): Warning: discarding unexpected Lms2.pvalue.html:54:1 (Lms2.pvalue.Rd:18): Error: is not recognized! Lms2.pvalue.html:54:1 (Lms2.pvalue.Rd:18): Warning: discarding unexpected Lms2.test.html:42:1 (Lms2.test.Rd:12): Error: is not recognized! Lms2.test.html:42:1 (Lms2.test.Rd:12): Warning: discarding unexpected Lms3.pvalue.html:58:1 (Lms3.pvalue.Rd:20): Error: is not recognized! Lms3.pvalue.html:58:1 (Lms3.pvalue.Rd:20): Warning: discarding unexpected Lms3.test.html:42:1 (Lms3.test.Rd:12): Error: is not recognized! Lms3.test.html:42:1 (Lms3.test.Rd:12): Warning: discarding unexpected Lms4.pvalue.html:62:1 (Lms4.pvalue.Rd:22): Error: is not recognized! Lms4.pvalue.html:62:1 (Lms4.pvalue.Rd:22): Warning: discarding unexpected Lms4.test.html:42:1 (Lms4.test.Rd:12): Error: is not recognized! Lms4.test.html:42:1 (Lms4.test.Rd:12): Warning: discarding unexpected Mod2.cv.html:55:1 (Mod2.cv.Rd:18): Error: is not recognized! Mod2.cv.html:55:1 (Mod2.cv.Rd:18): Warning: discarding unexpected Mod2.pvalue.html:54:1 (Mod2.pvalue.Rd:18): Error: is not recognized! Mod2.pvalue.html:54:1 (Mod2.pvalue.Rd:18): Warning: discarding unexpected Mod2.test.html:42:1 (Mod2.test.Rd:12): Error: is not recognized! Mod2.test.html:42:1 (Mod2.test.Rd:12): Warning: discarding unexpected Mod3.cv.html:59:1 (Mod3.cv.Rd:20): Error: is not recognized! Mod3.cv.html:59:1 (Mod3.cv.Rd:20): Warning: discarding unexpected Mod3.pvalue.html:58:1 (Mod3.pvalue.Rd:20): Error: is not recognized! Mod3.pvalue.html:58:1 (Mod3.pvalue.Rd:20): Warning: discarding unexpected Mod3.test.html:42:1 (Mod3.test.Rd:12): Error: is not recognized! Mod3.test.html:42:1 (Mod3.test.Rd:12): Warning: discarding unexpected Mod4.pvalue.html:62:1 (Mod4.pvalue.Rd:22): Error: is not recognized! Mod4.pvalue.html:62:1 (Mod4.pvalue.Rd:22): Warning: discarding unexpected Mod4.test.html:42:1 (Mod4.test.Rd:12): Error: is not recognized! Mod4.test.html:42:1 (Mod4.test.Rd:12): Warning: discarding unexpected * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs