* using log directory ‘/srv/hornik/tmp/CRAN_pretest/PRINCIPLED.Rcheck’ * using R Under development (unstable) (2025-11-24 r89059) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.5 (1) Debian flang version 21.1.5 (1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘PRINCIPLED/DESCRIPTION’ ... OK * this is package ‘PRINCIPLED’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘Rishi Desai ’ New submission Possibly misspelled words in DESCRIPTION: noninterventional (7:89) Unknown, possibly misspelled, fields in DESCRIPTION: ‘References’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘PRINCIPLED’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE PS_adj_with_MI: no visible global function definition for ‘as.formula’ PlanningPrecision: no visible global function definition for ‘aggregate’ PlanningPrecision: no visible global function definition for ‘as.formula’ PlanningPrecision: no visible global function definition for ‘capture.output’ analysis_specific_diagnostics: no visible global function definition for ‘capture.output’ analysis_specific_diagnostics: no visible global function definition for ‘as.formula’ analysis_specific_diagnostics: no visible global function definition for ‘ggplot’ analysis_specific_diagnostics: no visible global function definition for ‘aes’ analysis_specific_diagnostics: no visible binding for global variable ‘prop.scores’ analysis_specific_diagnostics: no visible global function definition for ‘sym’ analysis_specific_diagnostics: no visible global function definition for ‘after_stat’ analysis_specific_diagnostics: no visible binding for global variable ‘scaled’ analysis_specific_diagnostics: no visible global function definition for ‘geom_density’ analysis_specific_diagnostics: no visible global function definition for ‘scale_x_continuous’ analysis_specific_diagnostics: no visible global function definition for ‘scale_fill_manual’ analysis_specific_diagnostics: no visible global function definition for ‘scale_y_continuous’ analysis_specific_diagnostics: no visible global function definition for ‘theme’ analysis_specific_diagnostics: no visible global function definition for ‘element_text’ analysis_specific_diagnostics: no visible global function definition for ‘element_blank’ analysis_specific_diagnostics: no visible global function definition for ‘element_rect’ analysis_specific_diagnostics: no visible global function definition for ‘ggtitle’ analysis_specific_diagnostics: no visible binding for global variable ‘.weights’ analysis_specific_diagnostics : : no visible global function definition for ‘na.omit’ analysis_specific_diagnostics: no visible global function definition for ‘%>%’ analysis_specific_diagnostics: no visible binding for global variable ‘smd_crude’ analysis_specific_diagnostics: no visible binding for global variable ‘smd_PS’ analysis_specific_diagnostics: no visible global function definition for ‘theme_bw’ analysis_specific_diagnostics: no visible global function definition for ‘geom_point’ analysis_specific_diagnostics: no visible global function definition for ‘xlim’ analysis_specific_diagnostics: no visible global function definition for ‘ylim’ analysis_specific_diagnostics: no visible global function definition for ‘labs’ analysis_specific_diagnostics: no visible global function definition for ‘geom_vline’ analysis_specific_diagnostics: no visible global function definition for ‘geom_text’ analysis_specific_diagnostics: no visible binding for global variable ‘variable’ analysis_specific_diagnostics: no visible global function definition for ‘geom_boxplot’ analysis_specific_diagnostics: no visible global function definition for ‘guides’ balance_check_subset_figures: no visible global function definition for ‘capture.output’ balance_check_subset_figures: no visible global function definition for ‘match.data’ balance_check_subset_figures : : no visible global function definition for ‘na.omit’ balance_check_subset_figures: no visible global function definition for ‘%>%’ balance_check_subset_figures: no visible global function definition for ‘ggplot’ balance_check_subset_figures: no visible global function definition for ‘aes’ balance_check_subset_figures: no visible binding for global variable ‘smd_crude’ balance_check_subset_figures: no visible binding for global variable ‘smd_PS’ balance_check_subset_figures: no visible global function definition for ‘geom_point’ balance_check_subset_figures: no visible global function definition for ‘xlim’ balance_check_subset_figures: no visible global function definition for ‘ylim’ balance_check_subset_figures: no visible global function definition for ‘labs’ balance_check_subset_figures: no visible global function definition for ‘geom_vline’ balance_check_subset_figures: no visible global function definition for ‘geom_text’ balance_check_subset_figures: no visible binding for global variable ‘variable’ balance_check_subset_figures: no visible global function definition for ‘theme’ balance_check_subset_figures: no visible global function definition for ‘element_blank’ balance_check_subset_figures: no visible global function definition for ‘mutate’ balance_check_subset_figures: no visible binding for global variable ‘adjustment’ balance_check_subset_figures: no visible binding for global variable ‘smd’ balance_check_subset_figures: no visible global function definition for ‘scale_color_manual’ balance_check_subset_figures: no visible global function definition for ‘all_of’ balance_check_subset_figures: no visible binding for global variable ‘proportion_not_missing’ balance_check_subset_figures: no visible global function definition for ‘sym’ balance_check_subset_figures: no visible global function definition for ‘scale_fill_manual’ balance_check_subset_figures: no visible global function definition for ‘geom_bar’ balance_check_subset_figures: no visible global function definition for ‘scale_y_continuous’ balance_check_subset_figures: no visible global function definition for ‘element_text’ balance_check_subset_figures: no visible global function definition for ‘position_dodge’ general_diagnostics: no visible global function definition for ‘capture.output’ general_diagnostics : : no visible global function definition for ‘na.omit’ general_diagnostics: no visible global function definition for ‘%>%’ general_diagnostics: no visible global function definition for ‘gg_miss_upset’ general_diagnostics: no visible global function definition for ‘smdi_vis’ general_diagnostics: no visible global function definition for ‘theme’ general_diagnostics: no visible global function definition for ‘element_text’ general_diagnostics: no visible global function definition for ‘smdi_asmd’ outcome_analysis: no visible global function definition for ‘match.data’ outcome_analysis: no visible global function definition for ‘as.formula’ outcome_analysis: no visible global function definition for ‘coxph’ outcome_analysis : get_ir: no visible global function definition for ‘qnorm’ Undefined global functions or variables: %>% .weights adjustment aes after_stat aggregate all_of as.formula capture.output coxph element_blank element_rect element_text geom_bar geom_boxplot geom_density geom_point geom_text geom_vline gg_miss_upset ggplot ggtitle guides labs match.data mutate na.omit position_dodge prop.scores proportion_not_missing qnorm scale_color_manual scale_fill_manual scale_x_continuous scale_y_continuous scaled smd smd_PS smd_crude smdi_asmd smdi_vis sym theme theme_bw variable xlim ylim Consider adding importFrom("stats", "aggregate", "as.formula", "na.omit", "qnorm") importFrom("utils", "capture.output") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'PS_adj_with_MI.Rd': \examples lines wider than 100 characters: # Call the function. "varenicline" is coded 0/1 in the example data, so treatment_group_text is left blank. These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [82s/82s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs