* using log directory ‘/srv/hornik/tmp/CRAN_pretest/PND.heter.cluster.Rcheck’ * using R Under development (unstable) (2025-05-28 r88250) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘PND.heter.cluster/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PND.heter.cluster’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Xiao Liu ’ New submission Possibly misspelled words in DESCRIPTION: Liu (8:147) PND (8:129) ensembing (8:361) No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "Xiao", family = "Liu", role = c("aut", "cre"), email = "xiao.liu@austin.utexas.edu") as necessary. Package has a VignetteBuilder field but no prebuilt vignette index. Found the following (possibly) invalid URLs: URL: https://github.com/xliu12/PND.heter.cluster From: DESCRIPTION Status: 404 Message: Not Found The Description field contains (2025) (doi:10.1037/met0000723). The estimation uses the multiply Please write DOIs as . * checking package namespace information ... OK * checking package dependencies ... INFO Vignette dependencies required without any vignettes: ‘knitr’ ‘rmarkdown’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PND.heter.cluster’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE cluster.specific.ate: warning in eif.k(fold = 0, data_in = data_in, Xnames = Xnames, Fit = Fit, omit.tt = omit.tt, omit.k = omit.k, y1model_lme = y1model_lme, Yfamily = Yfamily, cv = FALSE, learners_tt = learners_tt, learners_k = learners_k, learners_y = learners_y): partial argument match of 'fold' to 'folds' SL.multinom: no visible global function definition for ‘multinom’ SL.multinom: no visible global function definition for ‘predict’ SL.nnet.modified: no visible global function definition for ‘predict’ SL.ranger.modified: no visible global function definition for ‘predict’ SL.xgboost.modified: no visible global function definition for ‘model.matrix’ SL.xgboost.modified: no visible global function definition for ‘predict’ atekCl: no visible global function definition for ‘%>%’ atekCl: no visible global function definition for ‘rename’ atekCl: no visible global function definition for ‘all_of’ atekCl: no visible global function definition for ‘mutate’ atekCl: no visible binding for global variable ‘indboot_var’ atekCl: no visible global function definition for ‘select’ atekCl: no visible binding for global variable ‘cluster’ atekCl: no visible binding for global variable ‘ate_k’ atekCl: no visible binding for global variable ‘std_error’ atekCl: no visible binding for global variable ‘boot_ci1’ atekCl: no visible binding for global variable ‘boot_ci2’ balance: no visible global function definition for ‘glue’ balance: no visible binding for global variable ‘covariate_name’ balance: no visible global function definition for ‘map’ balance : : no visible binding for global variable ‘covariate_name’ balance : : no visible global function definition for ‘sd’ balance : : no visible binding for global variable ‘sd’ balance: no visible global function definition for ‘%>%’ balance: no visible global function definition for ‘reduce’ balance: no visible binding for global variable ‘bind_rows’ cluster.specific.ate: no visible global function definition for ‘%>%’ cluster.specific.ate: no visible global function definition for ‘rename’ cluster.specific.ate: no visible global function definition for ‘all_of’ cluster.specific.ate : : no visible global function definition for ‘var’ cluster.specific.ate : : no visible global function definition for ‘qnorm’ cluster.specific.ate: no visible global function definition for ‘sd’ cluster.specific.ate: no visible global function definition for ‘glue’ cluster.specific.ate: no visible global function definition for ‘var’ cluster.specific.ate: no visible global function definition for ‘qnorm’ cluster.specific.ate : : no visible global function definition for ‘quantile’ cluster.specific.ate: no visible binding for global variable ‘quantile’ fitting.Y: no visible global function definition for ‘formula’ fitting.Y: no visible global function definition for ‘model.matrix’ fitting.Y: no visible global function definition for ‘SuperLearner’ fitting.Y : : no visible global function definition for ‘model.matrix’ fitting.Y : : no visible global function definition for ‘predict’ fitting.Y: no visible global function definition for ‘predict’ fitting.tt: no visible global function definition for ‘SuperLearner’ fitting.tt: no visible global function definition for ‘predict’ interact: no visible global function definition for ‘model.matrix’ Undefined global functions or variables: %>% SuperLearner all_of ate_k bind_rows boot_ci1 boot_ci2 cluster covariate_name formula glue indboot_var map model.matrix multinom mutate predict qnorm quantile reduce rename sd select std_error var Consider adding importFrom("stats", "formula", "model.matrix", "predict", "qnorm", "quantile", "sd", "var") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'atekCl.Rd': \examples lines wider than 100 characters: Kname = "K", # cluster assignment variable, coded as 0 for individuals in the (non-clustered) control arm These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [3s/3s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs