* installing *source* package 'PJFM' ...
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
using C++11
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEnsmallen/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c PJFMcovBD.cpp -o PJFMcovBD.o
PJFMcovBD.cpp: In function 'arma::vec field_to_alpha_vec(const arma::field<arma::Col<double> >&, const arma::vec&, int, arma::uvec, arma::uvec)':
PJFMcovBD.cpp:109:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  109 |   for(int j=0; j<idx.n_elem; j++){
      |                ~^~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::vec field_to_alpha_vec_full(const arma::field<arma::Col<double> >&, const arma::vec&, int, arma::uvec)':
PJFMcovBD.cpp:127:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  127 |   for(int k=0; k<alpha.n_elem; k++){
      |                ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat field_to_alpha_mat(const arma::field<arma::Mat<double> >&, const arma::vec&, int, const arma::uvec&, arma::uvec)':
PJFMcovBD.cpp:145:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  145 |   for(int j=0; j<idx.n_elem; j++){
      |                ~^~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat field_to_alpha_mat_full(const arma::field<arma::Mat<double> >&, const arma::vec&, int, const arma::uvec&)':
PJFMcovBD.cpp:163:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  163 |   for(int k=0; k<alpha.n_elem; k++){
      |                ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat field_to_zero_mat_full(const arma::field<arma::Mat<double> >&, const arma::vec&, int, const arma::uvec&, int)':
PJFMcovBD.cpp:180:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  180 |   for(int k=0; k<alpha.n_elem; k++){
      |                ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat field_to_zero_noalpha_mat_full(const arma::field<arma::Mat<double> >&, int, const arma::uvec&, int)':
PJFMcovBD.cpp:200:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  200 |   for(int k=0; k < p_x_vec.n_elem; k++){
      |                ~~^~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::field<arma::Col<double> > vec_to_field(const arma::vec&, const arma::uvec&)':
PJFMcovBD.cpp:259:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  259 |   for(int k=0; k<p_z_vec.n_elem; k++){
      |                ~^~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::field<arma::Col<double> > vec_to_field_L(const arma::vec&, const arma::uvec&)':
PJFMcovBD.cpp:274:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  274 |   for(int k=0; k<p_z_vec.n_elem; k++){
      |                ~^~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::vec field_to_vec(const arma::field<arma::Col<double> >&, const arma::uvec&)':
PJFMcovBD.cpp:290:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  290 |   for(int k=0; k<p_z_vec.n_elem; k++){
      |                ~^~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::vec LowTriVec_field(const arma::field<arma::Mat<double> >&)':
PJFMcovBD.cpp:303:18: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  303 |   for(int j =0; j< V.n_elem; j++){
      |                 ~^~~~~~~~~~
PJFMcovBD.cpp: In function 'double CoxFM_calcELBO(const CoxFM_data_t&, const CoxFM_para_t&)':
PJFMcovBD.cpp:419:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  419 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double CoxFM_updateBetaFun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:485:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  485 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double CoxFM_updateMuVFun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:538:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  538 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'void PJFM_para_t::MakeDiagonal()':
PJFMcovBD.cpp:917:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  917 |     for(int i=0; i<V.n_elem; i++){
      |                  ~^~~~~~~~~
PJFMcovBD.cpp: In function 'double PJFM_calcELBO(const PJFM_data_t&, const PJFM_para_t&)':
PJFMcovBD.cpp:958:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  958 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:988:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  988 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateAlphaFun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:1053:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1053 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1066:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1066 |       for(int k=0; k < alpha.n_elem;k++){
      |                    ~~^~~~~~~~~~~~~~
PJFMcovBD.cpp:1073:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1073 |         for(int j=0; j< XBZmu.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateAlpha_lasso_Fun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:1137:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1137 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1150:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1150 |       for(int k=0; k < alpha.n_elem;k++){
      |                    ~~^~~~~~~~~~~~~~
PJFMcovBD.cpp:1157:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1157 |         for(int j=0; j< XBZmu.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateBetaALLFun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:1222:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1222 |         for(int j=0; j< h_it.n_elem; j++){
      |                      ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1250:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1250 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateMuVFun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:1322:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1322 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1365:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1365 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateMuVFun_Diag::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:1472:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1472 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1516:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1516 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat calcHessian(const PJFM_data_t&, const PJFM_para_t&)':
PJFMcovBD.cpp:1697:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1697 |   for(int j=0; j<p_all_vec.n_elem;j++){
      |                ~^~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:1736:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1736 |       for(int j=0; j< h_it_recur.n_rows; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:1756:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1756 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1810:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1810 |       for(int j=0; j<h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~
PJFMcovBD.cpp:1836:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1836 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1863:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1863 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1873:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1873 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:1903:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1903 |     for(int j=0; j<h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~
PJFMcovBD.cpp:1910:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1910 |     for(int j=0; j<h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~
PJFMcovBD.cpp:1957:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1957 |       for(int j=0; j<h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~
PJFMcovBD.cpp:1970:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1970 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat calcHessianSUB(const PJFM_data_t&, const PJFM_para_t&)':
PJFMcovBD.cpp:2033:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2033 |   for(int j=0; j<p_all_vec.n_elem;j++){
      |                ~^~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:2072:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2072 |       for(int j=0; j< h_it_recur.n_rows; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:2092:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2092 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:2146:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2146 |       for(int j=0; j<h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~
PJFMcovBD.cpp:2172:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2172 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:2199:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2199 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:2209:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2209 |     for(int j=0; j< Z_iD.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp:2239:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2239 |     for(int j=0; j<h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~
PJFMcovBD.cpp:2246:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2246 |     for(int j=0; j<h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~
PJFMcovBD.cpp:2293:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2293 |       for(int j=0; j<h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~
PJFMcovBD.cpp:2306:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2306 |     for(int j=0; j< h_it.n_elem; j++){
      |                  ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In constructor 'PJFM_para_covBD_t::PJFM_para_covBD_t(const Rcpp::List&)':
PJFMcovBD.cpp:2960:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2960 |     for(int k=0; k<beta.n_elem; k++){
      |                  ~^~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'void PJFM_para_covBD_t::NonZeroAlpha()':
PJFMcovBD.cpp:2974:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2974 |       for(int j=0; j<alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::mat PJFM_calcELBO_baseRecur(const PJFM_data_t&, const PJFM_para_covBD_t&)':
PJFMcovBD.cpp:3007:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3007 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'double PJFM_calcELBO_covBD(const PJFM_data_t&, const PJFM_para_covBD_t&, const arma::mat&, const arma::vec&, double, double)':
PJFMcovBD.cpp:3053:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3053 |   for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3061:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3061 |     for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3069:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3069 |       for(int j=0; j< h_it.n_elem; j++){
      |                    ~^~~~~~~~~~~~~
PJFMcovBD.cpp:3095:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3095 |       for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3103:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3103 |     for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3108:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3108 |     for(int jj=0; jj < h_it.n_elem; jj++){
      |                   ~~~^~~~~~~~~~~~~
PJFMcovBD.cpp:3109:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3109 |       for(int j=0; j<para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'double PJFM_get_lammax_covBD(const PJFM_data_t&, const PJFM_para_covBD_t&, const arma::vec&)':
PJFMcovBD.cpp:3150:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3150 |       for(int jj=0; jj<tmp.n_elem; jj++){
      |                     ~~^~~~~~~~~~~
PJFMcovBD.cpp:3165:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3165 |     for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateAlphaVecLasso_covBD_Fun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:3223:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3223 |         for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3245:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3245 |       for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3250:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3250 |       for(int jj=0; jj < h_it.n_elem; jj++){
      |                     ~~~^~~~~~~~~~~~~
PJFMcovBD.cpp:3251:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3251 |         for(int j=0; j<para.alpha_idx.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3267:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3267 |       for(int j=0; j < alpha.n_elem;j++){
      |                    ~~^~~~~~~~~~~~~~
PJFMcovBD.cpp:3274:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3274 |         for(int jj=0; jj< XBZmu.n_elem; jj++){
      |                       ~~^~~~~~~~~~~~~~
PJFMcovBD.cpp: In constructor 'PJFM_updateAlphaLasso_covBD_Fun::PJFM_updateAlphaLasso_covBD_Fun(const PJFM_data_t&, const PJFM_para_covBD_t&, const arma::vec&)':
PJFMcovBD.cpp:3336:25: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3336 |         for(int jj=0; jj<tmp.n_elem; jj++){
      |                       ~~^~~~~~~~~~~
PJFMcovBD.cpp: In member function 'void PJFM_updateAlphaLasso_covBD_Fun::initiate()':
PJFMcovBD.cpp:3353:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3353 |         for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3357:27: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3357 |           for(int jj=0; jj<tmp.n_elem; jj++){
      |                         ~~^~~~~~~~~~~
PJFMcovBD.cpp:3373:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3373 |       for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::vec PJFM_combineBeta_covBD(const PJFM_data_t&, const PJFM_para_covBD_t&)':
PJFMcovBD.cpp:3480:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3480 |   for(int j=0; j< para.alpha_idx.n_elem;j++){
      |                ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'void PJFM_storeBeta_covBD(arma::vec, const PJFM_data_t&, PJFM_para_covBD_t&)':
PJFMcovBD.cpp:3500:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3500 |   for(int j=0; j< para.alpha_idx.n_elem;j++){
      |                ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateBetaALL_covBD_Fun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:3529:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3529 |     for(int k=0; k < para.alpha_idx.n_elem; k++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3539:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3539 |       for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3546:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3546 |         for(int j=0; j< h_it.n_elem; j++){
      |                      ~^~~~~~~~~~~~~
PJFMcovBD.cpp:3568:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3568 |       for(int j=0; j< para.alpha_idx.n_elem; j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3573:24: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3573 |       for(int jj=0; jj < h_it.n_elem; jj++){
      |                     ~~~^~~~~~~~~~~~~
PJFMcovBD.cpp:3574:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3574 |         for(int j=0; j<para.alpha_idx.n_elem; j++){
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'arma::vec PJFM_combineMuV_covBD(const PJFM_data_t&, const PJFM_para_covBD_t&, const int&)':
PJFMcovBD.cpp:3673:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3673 |   for(int j=0; j<para.alpha_idx.n_elem; j++){
      |                ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'void PJFM_storeMuV_covBD(const PJFM_data_t&, PJFM_para_covBD_t&, const arma::vec&, const int&)':
PJFMcovBD.cpp:3700:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3700 |   for(int j=0; j< para.alpha_idx.n_elem;j++){
      |                ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In member function 'double PJFM_updateMuV_covBD_Fun::EvaluateWithGradient(const arma::mat&, arma::mat&)':
PJFMcovBD.cpp:3748:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3748 |     for(int j=0; j< para.alpha_idx.n_elem;j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3770:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3770 |     for(int j =0; j<para.alpha_idx.n_elem;j++){
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3780:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3780 |       for(int jj=0; jj< h_it.n_elem; jj++){
      |                     ~~^~~~~~~~~~~~~
PJFMcovBD.cpp:3807:22: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3807 |       for(int j =0; j<para.alpha_idx.n_elem;j++){
      |                     ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3816:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3816 |     for(int jj=0;jj<h_it.n_elem; jj++){
      |                  ~~^~~~~~~~~~~~
PJFMcovBD.cpp:3817:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3817 |       for(int j=0; j<para.alpha_idx.n_elem;j++){
      |                    ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3833:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3833 |     for(int j=0; j<para.alpha_idx.n_elem;j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3843:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3843 |     for(int j=0; j<para.alpha_idx.n_elem;j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3851:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3851 |     for(int j=0; j<para.alpha_idx.n_elem; j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'void PJFM_updateSig_covBD(const PJFM_data_t&, PJFM_para_covBD_t&)':
PJFMcovBD.cpp:3884:19: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3884 |     for(int j=0; j< para.alpha_idx.n_elem;j++){
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'bool check_para(const PJFM_para_covBD_t&)':
PJFMcovBD.cpp:3922:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3922 |   for(int k=0; k<para.Sigma.n_elem; k++){
      |                ~^~~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3929:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3929 |   for(int k=0; k<para.beta.n_elem; k++){
      |                ~^~~~~~~~~~~~~~~~~
PJFMcovBD.cpp:3936:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3936 |   for(int i=0; i<para.mu.n_rows; i++ ){
      |                ~^~~~~~~~~~~~~~~
PJFMcovBD.cpp:3937:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3937 |     for(int k=0; k <para.mu.n_cols; k++ ){
      |                  ~~^~~~~~~~~~~~~~~
PJFMcovBD.cpp:3946:17: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3946 |   for(int i=0; i<para.V.n_rows; i++ ){
      |                ~^~~~~~~~~~~~~~
PJFMcovBD.cpp:3947:20: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3947 |     for(int k=0; k <para.V.n_cols; k++ ){
      |                  ~~^~~~~~~~~~~~~~
PJFMcovBD.cpp: In function 'Rcpp::List PJFM_covBD_seq(const Rcpp::List&, const Rcpp::List&, const arma::vec&, int, double, int, double, int, double, bool)':
PJFMcovBD.cpp:4294:30: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare]
 4294 |     if(para.alpha_idx.n_elem > pmax){
      |        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppEnsmallen/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o PJFM.dll tmp.def PJFMcovBD.o RcppExports.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-PJFM/00new/PJFM/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PJFM)