* using log directory ‘/srv/hornik/tmp/CRAN/PHeval.Rcheck’
* using R Under development (unstable) (2024-08-26 r87056)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘PHeval/DESCRIPTION’ ... OK
* this is package ‘PHeval’ version ‘1.0’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Cecile Chauvel <cecile.chauvel@univ-lyon1.fr>’

New maintainer:
  Cecile Chauvel <cecile.chauvel@univ-lyon1.fr>
Old maintainer(s):
  Cecile Chauvel <chauvel.cecile@gmail.com>

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Cecile",
                    family = "Chauvel",
                    role = c("aut", "cre"),
                    email = "cecile.chauvel@univ-lyon1.fr")
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘PHeval’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] NOTE
pvalmax: no visible global function definition for ‘rmvnorm’
testscore: no visible global function definition for ‘pnorm’
testscore: no visible global function definition for ‘pmvnorm’
testscore: no visible global function definition for ‘pchisq’
Undefined global functions or variables:
  pchisq pmvnorm pnorm rmvnorm
Consider adding
  importFrom("stats", "pchisq", "pnorm")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] WARNING
./man/PHeval-package.Rd: non-ASCII input and no declared encoding
./man/testscore.Rd: non-ASCII input and no declared encoding
problems found in ‘PHeval-package.Rd’, ‘testscore.Rd’
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'plotscore.Rd':
  \usage lines wider than 90 characters:
     plotscore(s, printCB = FALSE , component.num = 1:dim(s[[1]])[2], main = "" , xlab = "Time", ylab = "Standardized score", ylim)

Rd file 'testscore.Rd':
  \examples lines wider than 100 characters:
     coxph(Surv(futime,fustat)~ age+rx,data=ovarian) # the values 0.14 and -0.8 are the estimated coefficients in the Cox model.

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'testscore.Rd':
testscore
  Code: function(formula, data, beta0 = 0, n_rep = 10^6, digits = 5)
  Docs: function(formula, data, beta0 = 0, n_rep = 10^6, round.res = 5)
  Argument names in code not in docs:
    digits
  Argument names in docs not in code:
    round.res
  Mismatches in argument names:
    Position: 5 Code: digits Docs: round.res

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘PHeval-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: PHeval-package
> ### Title: Evaluation of the proportional hazards assumption with a
> ###   standardized score process
> ### Aliases: PHeval-package PHeval
> 
> ### ** Examples
> 
> library(survival)
> S=standscore(futime+fustat~resid.ds+rx,data=ovarian)
> plotscore(S,printCB = TRUE)
> testscore(futime+fustat~resid.ds+rx,data=ovarian)
Error in rmvnorm(n_rep, mean = c(0, 0, 0, 0), sigma = matrix(c(1, 0, sqrt(3)/2,  : 
  could not find function "rmvnorm"
Calls: testscore -> pvalmax
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 3 NOTEs