* using log directory ‘/srv/hornik/tmp/CRAN/PHENTHAUproc.Rcheck’
* using R Under development (unstable) (2023-08-10 r84931)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (6)
    GNU Fortran (Debian 13.2.0-1) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘PHENTHAUproc/DESCRIPTION’ ... OK
* this is package ‘PHENTHAUproc’ version ‘0.9’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Lorenz Bachfischer <lorenz.bachfischer@posteo.de>’

New submission

Possibly misspelled words in DESCRIPTION:
  FVA (8:224)
  Halbig (8:182)
  PHENTHAUproc (8:14)
  Phenology (2:8)
  Thaumetopoea (3:29, 8:136)
  Württemberg (8:289)
  al (8:192)
  et (8:189)
  processionary (3:9, 8:116)
  processionea (3:42, 8:149)

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/web/packages/terra/index.html
    From: inst/doc/PHENTHAUproc.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  The canonical URL of the CRAN page for a package is 
    https://CRAN.R-project.org/package=pkgname

The Title field should be in title case. Current version is:
‘Phenology modelling and early warning system for oak processionary moth (Thaumetopoea processionea) with local and spatial temperature data’
In title case that is:
‘Phenology Modelling and Early Warning System for Oak Processionary Moth (Thaumetopoea Processionea) with Local and Spatial Temperature Data’

The Description field should not start with the package name,
  'This package' or similar.
The Description field contains
  the FVA (https://www.fva-bw.de) a forest research institute in
Please enclose URLs in angle brackets (<...>).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘PHENTHAUproc’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] ERROR
Running examples in ‘PHENTHAUproc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mortality
> ### Title: Calculating starvation related mortality of Thaumetopoea
> ###   processionea
> ### Aliases: mortality
> 
> ### ** Examples
> 
> 
> srl <- load_test()
> 
> mort <- mortality(srl, 2020)
Warning: All formats failed to parse. No formats found.
Error in check_data_with_params(x, params) : 
  cf_start not in time attribute/vector!
Calls: mortality ... phenology -> calc_phenology -> check_data_with_params
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/4s] ERROR
  Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(PHENTHAUproc)
  > 
  > test_check("PHENTHAUproc")
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 7 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-phenthau.R:4:3'): phenthau ─────────────────────────────────────
  Error in `check_data_with_params(x, params)`: cf_start not in time attribute/vector!
  Backtrace:
      ▆
   1. └─PHENTHAUproc::phenthau(x) at test-phenthau.R:4:2
   2.   └─base::lapply(...)
   3.     └─PHENTHAUproc (local) FUN(X[[i]], ...)
   4.       └─PHENTHAUproc:::calc_phenology(x, y)
   5.         └─PHENTHAUproc:::check_data_with_params(x, params)
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 7 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [4s/4s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘PHENTHAUproc.Rmd’ using rmarkdown

Quitting from lines 79-81 [unnamed-chunk-5] (PHENTHAUproc.Rmd)
Error: processing vignette ‘PHENTHAUproc.Rmd’ failed with diagnostics:
cf_start not in time attribute/vector!
--- failed re-building ‘PHENTHAUproc.Rmd’

SUMMARY: processing the following file failed:
  ‘PHENTHAUproc.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 ERRORs, 1 NOTE