* using log directory ‘/srv/hornik/tmp/CRAN/PFIM.Rcheck’ * using R Under development (unstable) (2023-11-07 r85484) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (16) GNU Fortran (Debian 13.2.0-5) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘PFIM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PFIM’ version ‘6.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers Maintainer: ‘Romain Leroux ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PFIM’ can be installed ... [18s/18s] WARNING Found the following significant warnings: Warning: multiple methods tables found for ‘show’ See ‘/srv/hornik/tmp/CRAN/PFIM.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] NOTE Warning: multiple methods tables found for ‘show’ A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [20s/20s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) PFIM-package.Rd:60-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:77-82: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:86-108: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:111-121: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:125-129: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:133-137: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:141-164: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:167-177: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:181-189: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:193-202: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:206-215: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:219-244: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:248-272: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:276-286: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:290-300: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:304-310: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:314-318: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:322-366: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:369-376: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:380-384: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:388-392: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:396-400: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:404-420: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:424-431: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:435-439: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:443-448: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:452-458: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:462-468: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:472-476: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:480-486: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:490-504: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:507-522: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:526-530: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:534-550: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:554-572: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:576-583: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:587-594: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:597-607: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:611-615: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:619-626: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:630-642: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:646-653: Lost braces in \itemize; meant \describe ? checkRd: (-1) PFIM-package.Rd:656-665: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘LibraryOfPDModels’ ‘LibraryOfPKModels’ Undocumented S4 methods: generic 'EvaluateArm' and siglist 'Arm' generic 'EvaluateDesign' and siglist 'Design' generic 'EvaluateErrorModelDerivatives' and siglist 'ModelError' generic 'EvaluateFisherMatrix' and siglist 'BayesianFim' generic 'EvaluateFisherMatrix' and siglist 'IndividualFim' generic 'EvaluateFisherMatrix' and siglist 'PopulationFim' generic 'EvaluateModel' and siglist 'ModelAnalytic' generic 'EvaluateModel' and siglist 'ModelAnalyticInfusion' generic 'EvaluateModel' and siglist 'ModelAnalyticInfusionSteadyState' generic 'EvaluateModel' and siglist 'ModelAnalyticSteadyState' generic 'EvaluateModel' and siglist 'ModelODEBolus' generic 'EvaluateModel' and siglist 'ModelODEDoseInEquations' generic 'EvaluateModel' and siglist 'ModelODEDoseNotInEquations' generic 'EvaluateModel' and siglist 'ModelODEInfusionDoseInEquations' generic 'EvaluateVarianceFIM' and siglist 'IndividualFim' generic 'EvaluateVarianceFIM' and siglist 'PopulationFim' generic 'EvaluateVarianceModel' and siglist 'Model' generic 'Report' and siglist 'Evaluation' generic 'Report' and siglist 'Optimization' generic 'addModel' and siglist 'LibraryOfModels' generic 'addModels' and siglist 'LibraryOfModels' generic 'checkSamplingTimeConstraintsForContinuousOptimization' and siglist 'SamplingTimeConstraints' generic 'checkValiditySamplingConstraint' and siglist 'Design' generic 'convertPKModelAnalyticToPKModelODE' and siglist 'ModelAnalytic' generic 'convertPKModelAnalyticToPKModelODE' and siglist 'ModelAnalyticInfusion' generic 'convertPKModelAnalyticToPKModelODE' and siglist 'ModelAnalyticSteadyState' generic 'defineModel' and siglist 'Model' generic 'defineModelFromLibraryOfModels' and siglist 'Model' generic 'defineModelType' and siglist 'Model' generic 'defineModelUserDefined' and siglist 'Model' generic 'definePKModel' and siglist 'ModelAnalytic' generic 'definePKModel' and siglist 'ModelAnalyticInfusion' generic 'definePKModel' and siglist 'ModelAnalyticSteadyState' generic 'definePKModel' and siglist 'ModelODE' generic 'definePKModel' and siglist 'ModelODEDoseInEquations' generic 'definePKModel' and siglist 'ModelODEInfusionDoseInEquations' generic 'definePKPDModel' and siglist 'ModelAnalytic,ModelAnalytic' generic 'definePKPDModel' and siglist 'ModelAnalytic,ModelODE' generic 'definePKPDModel' and siglist 'ModelAnalyticInfusion,ModelAnalytic' generic 'definePKPDModel' and siglist 'ModelAnalyticInfusion,ModelODE' generic 'definePKPDModel' and siglist 'ModelAnalyticSteadyState,ModelAnalyticSteadyState' generic 'definePKPDModel' and siglist 'ModelAnalyticSteadyState,ModelODE' generic 'definePKPDModel' and siglist 'ModelODEBolus,ModelODE' generic 'definePKPDModel' and siglist 'ModelODEDoseInEquations,ModelODE' generic 'definePKPDModel' and siglist 'ModelODEDoseNotInEquations,ModelODE' generic 'definePKPDModel' and siglist 'ModelODEInfusion,ModelODE' generic 'definePKPDModel' and siglist 'ModelODEInfusionDoseInEquations,ModelODE' generic 'generateFimsFromConstraints' and siglist 'Optimization' generic 'generateReportEvaluation' and siglist 'BayesianFim' generic 'generateReportEvaluation' and siglist 'IndividualFim' generic 'generateReportEvaluation' and siglist 'PopulationFim' generic 'generateReportOptimization' and siglist 'FedorovWynnAlgorithm' generic 'generateReportOptimization' and siglist 'MultiplicativeAlgorithm' generic 'generateReportOptimization' and siglist 'PGBOAlgorithm' generic 'generateReportOptimization' and siglist 'PSOAlgorithm' generic 'generateReportOptimization' and siglist 'SimplexAlgorithm' generic 'generateSamplingsFromSamplingConstraints' and siglist 'SamplingTimeConstraints' generic 'generateTables' and siglist 'Evaluation' generic 'generateTables' and siglist 'Optimization' generic 'getAdjustedGradient' and siglist 'LogNormal' generic 'getAdjustedGradient' and siglist 'Normal' generic 'getAdministration' and siglist 'Arm' generic 'getAdministrationConstraint' and siglist 'Arm' generic 'getAdministrations' and siglist 'Arm' generic 'getAdministrationsConstraints' and siglist 'Arm' generic 'getArms' and siglist 'Design' generic 'getArms' and siglist 'OptimizationAlgorithm' generic 'getColumnAndParametersNamesFIM' and siglist 'BayesianFim' generic 'getColumnAndParametersNamesFIM' and siglist 'IndividualFim' generic 'getColumnAndParametersNamesFIM' and siglist 'PopulationFim' generic 'getColumnAndParametersNamesFIMInLatex' and siglist 'BayesianFim' generic 'getColumnAndParametersNamesFIMInLatex' and siglist 'IndividualFim' generic 'getColumnAndParametersNamesFIMInLatex' and siglist 'PopulationFim' generic 'getConditionNumberFixedEffects' and siglist 'Fim' generic 'getConditionNumberVarianceEffects' and siglist 'BayesianFim' generic 'getConditionNumberVarianceEffects' and siglist 'Fim' generic 'getContent' and siglist 'LibraryOfModels' generic 'getCorrelationMatrix' and siglist 'Fim' generic 'getDataFrameResults' and siglist 'MultiplicativeAlgorithm' generic 'getDcriterion' and siglist 'Fim' generic 'getDelta' and siglist 'MultiplicativeAlgorithm' generic 'getDerivatives' and siglist 'ModelError' generic 'getDescription' and siglist 'Model' generic 'getDesigns' and siglist 'PFIMProject' generic 'getDeterminant' and siglist 'Fim' generic 'getDistribution' and siglist 'ModelParameter' generic 'getDose' and siglist 'Administration' generic 'getDose' and siglist 'AdministrationConstraints' generic 'getEigenValues' and siglist 'Fim' generic 'getElementaryProtocols' and siglist 'Optimization' generic 'getEquation' and siglist 'ModelError' generic 'getEquations' and siglist 'Model' generic 'getEquationsAfterInfusion' and siglist 'Model' generic 'getEquationsDuringInfusion' and siglist 'Model' generic 'getEvaluationFIMResults' and siglist 'Optimization' generic 'getEvaluationInitialDesignResults' and siglist 'Optimization' generic 'getFim' and siglist 'Design' generic 'getFim' and siglist 'OptimizationAlgorithm' generic 'getFim' and siglist 'PFIMProject' generic 'getFisherMatrix' and siglist 'Fim' generic 'getFixedEffects' and siglist 'Fim' generic 'getFixedMu' and siglist 'ModelParameter' generic 'getFixedOmega' and siglist 'ModelParameter' generic 'getFixedParameters' and siglist 'Model' generic 'getFixedTimes' and siglist 'SamplingTimeConstraints' generic 'getInitialConditions' and siglist 'Arm' generic 'getInitialConditions' and siglist 'Model' generic 'getIterationAndCriteria' and siglist 'OptimizationAlgorithm' generic 'getLambda' and siglist 'MultiplicativeAlgorithm' generic 'getLibraryPDModels' and siglist 'LibraryOfModels' generic 'getLibraryPKModels' and siglist 'LibraryOfModels' generic 'getMinSampling' and siglist 'SamplingTimeConstraints' generic 'getModel' and siglist 'PFIMProject' generic 'getModelEquations' and siglist 'PFIMProject' generic 'getModelError' and siglist 'Model' generic 'getModelError' and siglist 'PFIMProject' generic 'getModelErrorParametersValues' and siglist 'Model' generic 'getModelFromLibrary' and siglist 'Model' generic 'getModelParameters' and siglist 'PFIMProject' generic 'getModelParametersValues' and siglist 'Model' generic 'getMu' and siglist 'Distribution' generic 'getMu' and siglist 'ModelParameter' generic 'getName' and siglist 'Arm' generic 'getName' and siglist 'Design' generic 'getName' and siglist 'LibraryOfModels' generic 'getName' and siglist 'Model' generic 'getName' and siglist 'ModelParameter' generic 'getName' and siglist 'PFIMProject' generic 'getNames' and siglist 'list' generic 'getNumberOfArms' and siglist 'Design' generic 'getNumberOfIterations' and siglist 'MultiplicativeAlgorithm' generic 'getNumberOfParameters' and siglist 'Model' generic 'getNumberOfTimesByWindows' and siglist 'SamplingTimeConstraints' generic 'getNumberOfsamplingsOptimisable' and siglist 'SamplingTimeConstraints' generic 'getOdeSolverParameters' and siglist 'Model' generic 'getOdeSolverParameters' and siglist 'PFIMProject' generic 'getOmega' and siglist 'Distribution' generic 'getOmega' and siglist 'ModelParameter' generic 'getOptimalDesign' and siglist 'OptimizationAlgorithm' generic 'getOptimalWeights' and siglist 'MultiplicativeAlgorithm' generic 'getOptimizationResults' and siglist 'Optimization' generic 'getOptimizer' and siglist 'PFIMProject' generic 'getOptimizerParameters' and siglist 'PFIMProject' generic 'getOutcome' and siglist 'Administration' generic 'getOutcome' and siglist 'AdministrationConstraints' generic 'getOutcome' and siglist 'ModelError' generic 'getOutcome' and siglist 'SamplingTimeConstraints' generic 'getOutcome' and siglist 'SamplingTimes' generic 'getOutcomes' and siglist 'Model' generic 'getOutcomes' and siglist 'PFIMProject' generic 'getOutcomesEvaluation' and siglist 'Design' generic 'getOutcomesForEvaluation' and siglist 'Model' generic 'getOutcomesGradient' and siglist 'Design' generic 'getPDModel' and siglist 'LibraryOfPKPDModels' generic 'getPKModel' and siglist 'LibraryOfPKPDModels' generic 'getPKPDModel' and siglist 'LibraryOfPKPDModels' generic 'getParameters' and siglist 'Distribution' generic 'getParameters' and siglist 'Model' generic 'getParameters' and siglist 'ModelError' generic 'getProportionsOfSubjects' and siglist 'Optimization' generic 'getRSE' and siglist 'BayesianFim' generic 'getRSE' and siglist 'IndividualFim' generic 'getRSE' and siglist 'PopulationFim' generic 'getSE' and siglist 'Fim' generic 'getSamplingTime' and siglist 'Arm' generic 'getSamplingTimeConstraint' and siglist 'Arm' generic 'getSamplingTimes' and siglist 'Arm' generic 'getSamplingTimesConstraints' and siglist 'Arm' generic 'getSamplings' and siglist 'SamplingTimeConstraints' generic 'getSamplings' and siglist 'SamplingTimes' generic 'getSamplingsWindows' and siglist 'SamplingTimeConstraints' generic 'getShrinkage' and siglist 'BayesianFim' generic 'getShrinkage' and siglist 'IndividualFim' generic 'getShrinkage' and siglist 'PopulationFim' generic 'getSigmaInter' and siglist 'ModelError' generic 'getSigmaSlope' and siglist 'ModelError' generic 'getSize' and siglist 'Arm' generic 'getSize' and siglist 'Design' generic 'getTau' and siglist 'Administration' generic 'getTimeDose' and siglist 'Administration' generic 'getTinf' and siglist 'Administration' generic 'getVarianceEffects' and siglist 'Fim' generic 'getcError' and siglist 'ModelError' generic 'isDoseInEquations' and siglist 'Model' generic 'isModelAnalytic' and siglist 'Model' generic 'isModelBolus' and siglist 'Model' generic 'isModelInfusion' and siglist 'Model' generic 'isModelODE' and siglist 'Model' generic 'isModelSteadyState' and siglist 'Model' generic 'optimize' and siglist 'FedorovWynnAlgorithm' generic 'optimize' and siglist 'MultiplicativeAlgorithm' generic 'optimize' and siglist 'PGBOAlgorithm' generic 'optimize' and siglist 'PSOAlgorithm' generic 'optimize' and siglist 'SimplexAlgorithm' generic 'parametersForComputingGradient' and siglist 'Model' generic 'plot' and siglist 'Evaluation' generic 'plotOutcomesEvaluation' and siglist 'Design' generic 'plotOutcomesGradient' and siglist 'Design' generic 'plotRSE' and siglist 'PFIMProject' generic 'plotSE' and siglist 'PFIMProject' generic 'plotShrinkage' and siglist 'PFIMProject' generic 'plotWeights' and siglist 'MultiplicativeAlgorithm' generic 'plotWeights' and siglist 'Optimization' generic 'reportTablesAdministration' and siglist 'Design' generic 'reportTablesDesign' and siglist 'Design' generic 'reportTablesFIM' and siglist 'BayesianFim' generic 'reportTablesFIM' and siglist 'IndividualFim' generic 'reportTablesFIM' and siglist 'PopulationFim' generic 'reportTablesModelError' and siglist 'Model' generic 'reportTablesModelParameters' and siglist 'Model' generic 'reportTablesPlot' and siglist 'Evaluation' generic 'reportTablesSamplingConstraints' and siglist 'Design' generic 'resizeFisherMatrix' and siglist 'ANY' generic 'run' and siglist 'Evaluation' generic 'run' and siglist 'Optimization' generic 'setAdministrations' and siglist 'Arm' generic 'setArm' and siglist 'Design' generic 'setArms' and siglist 'Design' generic 'setArms' and siglist 'OptimizationAlgorithm' generic 'setContent' and siglist 'LibraryOfModels' generic 'setDerivatives' and siglist 'ModelError' generic 'setDescription' and siglist 'Model' generic 'setDesigns' and siglist 'Optimization' generic 'setDistribution' and siglist 'ModelParameter' generic 'setDose' and siglist 'Administration' generic 'setEquation' and siglist 'ModelError' generic 'setEquations' and siglist 'Model' generic 'setEquationsAfterInfusion' and siglist 'Model' generic 'setEquationsDuringInfusion' and siglist 'Model' generic 'setEvaluationFIMResults' and siglist 'Optimization' generic 'setEvaluationInitialDesignResults' and siglist 'Optimization' generic 'setFim' and siglist 'Design' generic 'setFimTypeToString' and siglist 'Fim' generic 'setFisherMatrix' and siglist 'Fim' generic 'setFixedEffects' and siglist 'Fim' generic 'setFixedMu' and siglist 'ModelParameter' generic 'setFixedOmega' and siglist 'ModelParameter' generic 'setInitialConditions' and siglist 'Model' generic 'setIterationAndCriteria' and siglist 'OptimizationAlgorithm' generic 'setModel' and siglist 'PFIMProject' generic 'setModelError' and siglist 'Model' generic 'setModelFromLibrary' and siglist 'Model' generic 'setMu' and siglist 'Distribution' generic 'setMu' and siglist 'ModelParameter' generic 'setName' and siglist 'Arm' generic 'setName' and siglist 'Design' generic 'setName' and siglist 'Model' generic 'setNumberOfArms' and siglist 'Design' generic 'setOdeSolverParameters' and siglist 'Model' generic 'setOmega' and siglist 'Distribution' generic 'setOmega' and siglist 'ModelParameter' generic 'setOptimalDesign' and siglist 'OptimizationAlgorithm' generic 'setOptimalWeights' and siglist 'MultiplicativeAlgorithm' generic 'setOptimizationResults' and siglist 'Optimization' generic 'setOutcome' and siglist 'Administration' generic 'setOutcome' and siglist 'SamplingTimes' generic 'setOutcomes' and siglist 'Model' generic 'setOutcomesEvaluation' and siglist 'Design' generic 'setOutcomesForEvaluation' and siglist 'Model' generic 'setOutcomesGradient' and siglist 'Design' generic 'setParameters' and siglist 'Distribution' generic 'setParameters' and siglist 'FedorovWynnAlgorithm' generic 'setParameters' and siglist 'Model' generic 'setParameters' and siglist 'MultiplicativeAlgorithm' generic 'setParameters' and siglist 'PGBOAlgorithm' generic 'setParameters' and siglist 'PSOAlgorithm' generic 'setParameters' and siglist 'SimplexAlgorithm' generic 'setSamplingConstraintForOptimization' and siglist 'Design' generic 'setSamplingTime' and siglist 'Arm' generic 'setSamplingTimes' and siglist 'Arm' generic 'setSamplingTimesConstraints' and siglist 'Arm' generic 'setSamplings' and siglist 'SamplingTimes' generic 'setShrinkage' and siglist 'BayesianFim' generic 'setShrinkage' and siglist 'IndividualFim' generic 'setShrinkage' and siglist 'PopulationFim' generic 'setSigmaInter' and siglist 'ModelError' generic 'setSigmaSlope' and siglist 'ModelError' generic 'setSize' and siglist 'Arm' generic 'setSize' and siglist 'Design' generic 'setTau' and siglist 'Administration' generic 'setTimeDose' and siglist 'Administration' generic 'setTinf' and siglist 'Administration' generic 'setVarianceEffects' and siglist 'Fim' generic 'setcError' and siglist 'ModelError' generic 'show' and siglist 'Design' generic 'show' and siglist 'Evaluation' generic 'show' and siglist 'FedorovWynnAlgorithm' generic 'show' and siglist 'MultiplicativeAlgorithm' generic 'show' and siglist 'Optimization' generic 'show' and siglist 'PGBOAlgorithm' generic 'show' and siglist 'PSOAlgorithm' generic 'show' and siglist 'SimplexAlgorithm' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [8s/8s] OK * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [3s/3s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 WARNINGs, 2 NOTEs