* using log directory ‘/srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck’ * using R Under development (unstable) (2025-05-16 r88213) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘PETIndex/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PETIndex’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Anas Rulloh Budi Alamsyah ’ New submission License components with restrictions and base license permitting such: MIT + file LICENSE Possibly misspelled words in DESCRIPTION: TOPSIS (3:58, 9:80) socio (11:29) No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = c("Anas", "Rulloh", "Budi"), family = "Alamsyah", role = c("aut", "cre"), email = "anasrbudi@bps.go.id") as necessary. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PETIndex’ can be installed ... [3s/3s] WARNING Found the following significant warnings: Warning: /srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00_pkg_src/PETIndex/man/pCA_each_dim.Rd:25: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00_pkg_src/PETIndex/man/pCA_each_dim.Rd:29: unexpected section header '\value' Warning: /srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00_pkg_src/PETIndex/man/pCA_each_dim.Rd:37: unexpected section header '\description' Warning: /srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00_pkg_src/PETIndex/man/pCA_each_dim.Rd:44: unexpected section header '\examples' Warning: /srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00_pkg_src/PETIndex/man/pCA_each_dim.Rd:52: unexpected END_OF_INPUT ' See ‘/srv/hornik/tmp/CRAN_pretest/PETIndex.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Invalid license file pointers: LICENSE * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘dataSimulation’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING 'library' or 'require' calls not declared from: ‘FactoMineR’ ‘dplyr’ 'library' or 'require' calls in package code: ‘FactoMineR’ ‘dplyr’ Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] NOTE bartLetteachDim: no visible global function definition for ‘cor’ bartLetteachDim: no visible global function definition for ‘qchisq’ bartLetteachDim: no visible global function definition for ‘pchisq’ normalise : zscore: no visible global function definition for ‘sd’ Undefined global functions or variables: cor pchisq qchisq sd Consider adding importFrom("stats", "cor", "pchisq", "qchisq", "sd") to your NAMESPACE file. * checking Rd files ... [0s/0s] WARNING prepare_Rd: ./man/pCA_each_dim.Rd:25: unknown macro '\item' prepare_Rd: ./man/pCA_each_dim.Rd:29: unexpected section header '\value' prepare_Rd: ./man/pCA_each_dim.Rd:37: unexpected section header '\description' prepare_Rd: ./man/pCA_each_dim.Rd:44: unexpected section header '\examples' prepare_Rd: ./man/pCA_each_dim.Rd:52: unexpected END_OF_INPUT ' ' checkRd: (-1) pCA_each_dim.Rd:25: Lost braces 25 | \item{method}{A character string indicating which PCA method to use. | ^ checkRd: (-1) pCA_each_dim.Rd:25-27: Lost braces 25 | \item{method}{A character string indicating which PCA method to use. | ^ checkRd: (-1) pCA_each_dim.Rd:29-36: Lost braces 29 | \value{ | ^ checkRd: (-1) pCA_each_dim.Rd:37-43: Lost braces 37 | \description{ | ^ checkRd: (-1) pCA_each_dim.Rd:44-51: Lost braces 44 | \examples{ | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'pCA_each_dim.Rd' ‘method’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... NOTE Rd files without \description: ‘pCA_each_dim.Rd’ * checking for unstated dependencies in examples ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [12s/13s] ERROR Running ‘test.R’ [12s/13s] Running the tests in ‘tests/test.R’ failed. Complete output: > install.packages("readxl", repos = "https://cran.rstudio.com/") Installing package into '/tmp/RtmpK3EEWb/RLIBS_3e8c877066751' (as 'lib' is unspecified) trying URL 'https://cran.rstudio.com/src/contrib/readxl_1.4.5.tar.gz' Content type 'application/x-gzip' length 1636512 bytes (1.6 MB) ================================================== downloaded 1.6 MB * installing *source* package 'readxl' ... ** this is package 'readxl' version '1.4.5' ** package 'readxl' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'Debian clang version 19.1.7 (3)' using C++ compiler: 'Debian clang version 19.1.7 (3)' clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c cpp11.cpp -o cpp11.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c XlsWorkBook.cpp -o XlsWorkBook.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c XlsxWorkBook.cpp -o XlsxWorkBook.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c zip.cpp -o zip.o clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c Read.cpp -o Read.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cran.c -o cran.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libxls/xlstool.c -o libxls/xlstool.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libxls/endian.c -o libxls/endian.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libxls/ole.c -o libxls/ole.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libxls/xls.c -o libxls/xls.o clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iunix -I. -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/cpp11/include' -I'/tmp/RtmpK3EEWb/RLIBS_3e8c877066751/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c libxls/locale.c -o libxls/locale.o clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o readxl.so cpp11.o XlsWorkBook.o XlsxWorkBook.o zip.o Read.o cran.o libxls/xlstool.o libxls/endian.o libxls/ole.o libxls/xls.o libxls/locale.o -L/home/hornik/tmp/R/lib -lR Error in file(filename, "r", encoding = encoding) : cannot open the connection Calls: local ... eval.parent -> eval -> eval -> eval -> eval -> source -> file In addition: Warning message: In file(filename, "r", encoding = encoding) : cannot open file 'startup.Rs': No such file or directory Execution halted make: *** [/home/hornik/tmp/R/share/make/shlib.mk:24: symbols.rds] Error 1 installing to /tmp/RtmpK3EEWb/RLIBS_3e8c877066751/00LOCK-readxl/00new/readxl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readxl) The downloaded source packages are in '/tmp/RtmpK3EEWb/working_dir/RtmpHkI10M/downloaded_packages' > library(readxl) > library(PETIndex) > dt <- read_excel("G:/My Drive/00--Pekerjaan/PENELITIAN/01--Project/Pengembangan Package pftopsis/pfetopsis/dataSimulation/data_new_without_disease.xlsx", sheet = "data") Error: `path` does not exist: 'G:/My Drive/00--Pekerjaan/PENELITIAN/01--Project/Pengembangan Package pftopsis/pfetopsis/dataSimulation/data_new_without_disease.xlsx' Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 5 WARNINGs, 4 NOTEs