R Under development (unstable) (2024-06-30 r86854 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(PCAPAM50) ======================================== PCAPAM50 version 1.0.0 Documentation: https://www.wriwindber.org/tools-portal/pca-pam50/ If you use it in published research, please cite: PCAPAM50: Raj-Kumar PK, et al.Scientific reports. 2019 May 28;9(1):7956. PAM50: Parker JS, et al. Journal of clinical oncology. 2009 Mar 3;27(8):1160. This message can be suppressed by: suppressPackageStartupMessages(library(PCAPAM50)) ======================================== > > test_check("PCAPAM50") ======================================== circlize version 0.4.16 CRAN page: https://cran.r-project.org/package=circlize Github page: https://github.com/jokergoo/circlize Documentation: https://jokergoo.github.io/circlize_book/book/ If you use it in published research, please cite: Gu, Z. circlize implements and enhances circular visualization in R. Bioinformatics 2014. This message can be suppressed by: suppressPackageStartupMessages(library(circlize)) ======================================== [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-functions_PCA-PAM50.R:9:3'): makeCalls.PC1ihc works correctly with test data ── Error in `readChar(con, 5L, useBytes = TRUE)`: cannot open the connection Backtrace: ▆ 1. └─base::load(data_path) at test-functions_PCA-PAM50.R:9:3 2. └─base::readChar(con, 5L, useBytes = TRUE) [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted