* using log directory 'd:/RCompile/CRANincoming/R-devel/OpenMindat.Rcheck' * using R Under development (unstable) (2024-01-31 r85845 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'OpenMindat/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'OpenMindat' version '1.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Xiang Que ' New submission Possibly misspelled words in DESCRIPTION: OpenMindat (13:26) mindat (13:142) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'OpenMindat' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'geomaterials_contain_all_but_not_elems.Rd': \examples lines wider than 100 characters: df<-geomaterials_contain_all_but_not_elems (c('Fe','S'), c('O'),fields ="id,name,mindat_formula,elements") Rd file 'localities_list_elems_exc.Rd': \examples lines wider than 100 characters: df <-localities_list_elems_exc(c("H", "O", "Si", "Al","Fe", "Ca", "Na", "K", "P", "C", "Mn", "F", "Mg", "S")) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [14s] NOTE Found the following HTML validation problems: geomaterials_updated_at.html:38:10 (geomaterials_updated_at.Rd:10): Error: is not recognized! Did you mean to enable the custom-tags option? geomaterials_updated_at.html:38:10 (geomaterials_updated_at.Rd:10): Warning: discarding unexpected localities_list_updated_at.html:38:10 (localities_list_updated_at.Rd:10): Error: is not recognized! Did you mean to enable the custom-tags option? localities_list_updated_at.html:38:10 (localities_list_updated_at.Rd:10): Warning: discarding unexpected minerals_ima_updated_at.html:38:10 (minerals_ima_updated_at.Rd:10): Error: is not recognized! Did you mean to enable the custom-tags option? minerals_ima_updated_at.html:38:10 (minerals_ima_updated_at.Rd:10): Warning: discarding unexpected * DONE Status: 3 NOTEs