* using log directory ‘/srv/hornik/tmp/CRAN/OpenMindat.Rcheck’
* using R Under development (unstable) (2024-01-31 r85845)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘OpenMindat/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenMindat’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Xiang Que <xiangq@uidaho.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  OpenMindat (13:26)
  mindat (13:142)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘OpenMindat’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'geomaterials_contain_all_but_not_elems.Rd':
  \examples lines wider than 100 characters:
     df<-geomaterials_contain_all_but_not_elems (c('Fe','S'), c('O'),fields ="id,name,mindat_formula,elements")

Rd file 'localities_list_elems_exc.Rd':
  \examples lines wider than 100 characters:
     df <-localities_list_elems_exc(c("H", "O", "Si", "Al","Fe", "Ca", "Na", "K", "P", "C", "Mn", "F", "Mg", "S"))

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [5s/4s] OK
* checking HTML version of manual ... [1s/1s] NOTE
Found the following HTML validation problems:
geomaterials_updated_at.html:38:10 (geomaterials_updated_at.Rd:10): Error: <date-time> is not recognized! Did you mean to enable the custom-tags option?
geomaterials_updated_at.html:38:10 (geomaterials_updated_at.Rd:10): Warning: discarding unexpected <date-time>
localities_list_updated_at.html:38:10 (localities_list_updated_at.Rd:10): Error: <date-time> is not recognized! Did you mean to enable the custom-tags option?
localities_list_updated_at.html:38:10 (localities_list_updated_at.Rd:10): Warning: discarding unexpected <date-time>
minerals_ima_updated_at.html:38:10 (minerals_ima_updated_at.Rd:10): Error: <date-time> is not recognized! Did you mean to enable the custom-tags option?
minerals_ima_updated_at.html:38:10 (minerals_ima_updated_at.Rd:10): Warning: discarding unexpected <date-time>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs