* installing *source* package 'OpEnHiMR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'Metrics::precision' by 'caret::precision' when loading 'OpEnHiMR' Warning: replacing previous import 'Metrics::recall' by 'caret::recall' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::start' by 'stats::start' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::end' by 'stats::end' when loading 'OpEnHiMR' Warning: replacing previous import 'seqinr::count' by 'dplyr::count' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setequal' by 'dplyr::setequal' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::filter' by 'dplyr::filter' when loading 'OpEnHiMR' Warning: replacing previous import 'party::where' by 'dplyr::where' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::intersect' by 'dplyr::intersect' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::union' by 'dplyr::union' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::lag' by 'dplyr::lag' when loading 'OpEnHiMR' Warning: replacing previous import 'randomForest::combine' by 'dplyr::combine' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::collapse' by 'dplyr::collapse' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setdiff' by 'dplyr::setdiff' when loading 'OpEnHiMR' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'Metrics::precision' by 'caret::precision' when loading 'OpEnHiMR' Warning: replacing previous import 'Metrics::recall' by 'caret::recall' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::start' by 'stats::start' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::end' by 'stats::end' when loading 'OpEnHiMR' Warning: replacing previous import 'seqinr::count' by 'dplyr::count' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setequal' by 'dplyr::setequal' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::filter' by 'dplyr::filter' when loading 'OpEnHiMR' Warning: replacing previous import 'party::where' by 'dplyr::where' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::intersect' by 'dplyr::intersect' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::union' by 'dplyr::union' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::lag' by 'dplyr::lag' when loading 'OpEnHiMR' Warning: replacing previous import 'randomForest::combine' by 'dplyr::combine' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::collapse' by 'dplyr::collapse' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setdiff' by 'dplyr::setdiff' when loading 'OpEnHiMR' ** testing if installed package can be loaded from final location Warning: replacing previous import 'Metrics::precision' by 'caret::precision' when loading 'OpEnHiMR' Warning: replacing previous import 'Metrics::recall' by 'caret::recall' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::start' by 'stats::start' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::end' by 'stats::end' when loading 'OpEnHiMR' Warning: replacing previous import 'seqinr::count' by 'dplyr::count' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setequal' by 'dplyr::setequal' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::filter' by 'dplyr::filter' when loading 'OpEnHiMR' Warning: replacing previous import 'party::where' by 'dplyr::where' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::intersect' by 'dplyr::intersect' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::union' by 'dplyr::union' when loading 'OpEnHiMR' Warning: replacing previous import 'stats::lag' by 'dplyr::lag' when loading 'OpEnHiMR' Warning: replacing previous import 'randomForest::combine' by 'dplyr::combine' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::collapse' by 'dplyr::collapse' when loading 'OpEnHiMR' Warning: replacing previous import 'Biostrings::setdiff' by 'dplyr::setdiff' when loading 'OpEnHiMR' ** testing if installed package keeps a record of temporary installation path * DONE (OpEnHiMR)