* using log directory 'd:/RCompile/CRANincoming/R-devel/OpEnHiMR.Rcheck'
* using R Under development (unstable) (2024-05-17 r86566 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'OpEnHiMR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OpEnHiMR' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Dipro Sinha <diprosinha@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Histone (3:60)
  abiotic (15:546)
  acetylation (15:347)
  biotic (15:535)
  deacetylation (15:206)
  epigenetic (15:45)
  histone (15:94, 15:198, 15:224, 15:339)
  lysine (15:235)
  trimethylation (15:245)

The Title field should be in title case. Current version is:
'Optimization based Ensemble Model for Prediction of Histone Modifications in Rice'
In title case that is:
'Optimization Based Ensemble Model for Prediction of Histone Modifications in Rice'

The Description field contains
  stresses <https://doi.org/10.1186/s12864-019-5489-4>.
Please write DOIs as <doi:prefix/suffix>.

Size of tarball: 24823525 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OpEnHiMR' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'Metrics::precision' by 'caret::precision' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Metrics::recall' by 'caret::recall' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::start' by 'stats::start' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::end' by 'stats::end' when loading 'OpEnHiMR'
  Warning: replacing previous import 'seqinr::count' by 'dplyr::count' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::setequal' by 'dplyr::setequal' when loading 'OpEnHiMR'
  Warning: replacing previous import 'stats::filter' by 'dplyr::filter' when loading 'OpEnHiMR'
  Warning: replacing previous import 'party::where' by 'dplyr::where' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::intersect' by 'dplyr::intersect' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::union' by 'dplyr::union' when loading 'OpEnHiMR'
  Warning: replacing previous import 'stats::lag' by 'dplyr::lag' when loading 'OpEnHiMR'
  Warning: replacing previous import 'randomForest::combine' by 'dplyr::combine' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::collapse' by 'dplyr::collapse' when loading 'OpEnHiMR'
  Warning: replacing previous import 'Biostrings::setdiff' by 'dplyr::setdiff' when loading 'OpEnHiMR'
See 'd:/RCompile/CRANincoming/R-devel/OpEnHiMR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [35s] NOTE
pred_hmc: no visible binding for global variable 'Class_1'
pred_hmc: no visible binding for global variable 'Class_2'
pred_hmc: no visible binding for global variable 'Class_3'
pred_hmc: no visible binding for global variable 'Class_4'
pred_hmc: no visible binding for global variable
  'Predicted_Class_Label'
pred_hmc: no visible binding for global variable 'Highest_Probability'
Undefined global functions or variables:
  Class_1 Class_2 Class_3 Class_4 Highest_Probability
  Predicted_Class_Label
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [13s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs