* using log directory 'd:/RCompile/CRANincoming/R-devel/OpEnCAST.Rcheck'
* using R Under development (unstable) (2025-12-15 r89175 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'OpEnCAST/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OpEnCAST' version '0.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Abhik Sarkar <abhik.iasri@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Arabidopsis (17:399)
  OpEnCAST (17:163)
  Oryza (17:377)
  dicot (17:392)
  epigenetic (17:46)
  mA (17:258)
  mC (17:244, 17:249)
  methylation (4:9, 17:18, 17:261)
  monocot (17:368)
  planTs (4:31)
  sp (17:383, 17:411)

The Title field should be in title case. Current version is:
  'Optimization based Ensemble algorithm for Cytosine and Adenine methylation Search in planTs'
In title case that is:
  'Optimization Based Ensemble Algorithm for Cytosine and Adenine Methylation Search in planTs'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'OpEnCAST' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'Metrics::precision' by 'caret::precision' when loading 'OpEnCAST'
  Warning: replacing previous import 'Metrics::recall' by 'caret::recall' when loading 'OpEnCAST'
  Warning: replacing previous import 'randomForest::importance' by 'ranger::importance' when loading 'OpEnCAST'
  Warning: replacing previous import 'kernlab::rho' by 'seqinr::rho' when loading 'OpEnCAST'
  Warning: replacing previous import 'caret::dotPlot' by 'seqinr::dotPlot' when loading 'OpEnCAST'
  Warning: replacing previous import 'Biostrings::translate' by 'seqinr::translate' when loading 'OpEnCAST'
  Warning: replacing previous import 'Biostrings::start' by 'stats::start' when loading 'OpEnCAST'
  Warning: replacing previous import 'kernlab::predict' by 'stats::predict' when loading 'OpEnCAST'
  Warning: replacing previous import 'kernlab::fitted' by 'stats::fitted' when loading 'OpEnCAST'
  Warning: replacing previous import 'Biostrings::end' by 'stats::end' when loading 'OpEnCAST'
  Warning: replacing previous import 'kernlab::coef' by 'stats::coef' when loading 'OpEnCAST'
See 'd:/RCompile/CRANincoming/R-devel/OpEnCAST.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [25s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [15s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE