* using log directory ‘/srv/hornik/tmp/CRAN/Oncofilterfast.Rcheck’ * using R Under development (unstable) (2024-03-20 r86162) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘Oncofilterfast/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Oncofilterfast’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Pheonix chen ’ New submission Possibly misspelled words in DESCRIPTION: filte (3:34) The Title field should be in title case. Current version is: ‘This Package can help you filte the genes that can significantly influence the survival of certain cancers’ In title case that is: ‘This Package can Help you Filte the Genes that can Significantly Influence the Survival of Certain Cancers’ Size of tarball: 13499307 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘Oncofilterfast’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: ‘Pheonix chen(shuaiyuchen4@gmail.com)’ Authors@R: ‘Pheonix Chen [aut, cre] ()’ Maintainer field differs from that derived from Authors@R Maintainer: ‘Pheonix chen ’ Authors@R: ‘Pheonix Chen ’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘survival’ ‘survminer’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE calculator: no visible global function definition for ‘surv_cutpoint’ calculator: no visible global function definition for ‘surv_categorize’ calculator: no visible global function definition for ‘Surv’ calculator: no visible global function definition for ‘survdiff’ Undefined global functions or variables: Surv surv_categorize surv_cutpoint survdiff * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [13s/13s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed calculator 11.562 0.206 11.768 * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 5 NOTEs