R Under development (unstable) (2025-04-24 r88177 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(OncoBayes2) Loading required package: RBesT This is RBesT version 1.8.2 (released 2025-04-25, git-sha b9dab00) This is OncoBayes2 version 0.9.3 (released 2025-04-25, git-sha 039fe9b) > > test_check("OncoBayes2") Loading required package: StanHeaders rstan version 2.32.7 (Stan version 2.32.2) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()). To avoid recompilation of unchanged Stan programs, we recommend calling rstan_options(auto_write = TRUE) For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions, change `threads_per_chain` option: rstan_options(threads_per_chain = 1) Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file Tests running with fake sampling Attaching package: 'tibble' The following object is masked from 'package:assertthat': has_name Attaching package: 'tidyr' The following object is masked from 'package:rstan': extract The following object is masked from 'package:testthat': matches Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Tests running with fake sampling No stratum defined - assigning all groups to single stratum "all" No stratum defined - assigning all groups to single stratum "all" No stratum defined - assigning all groups to single stratum "all" [ FAIL 0 | WARN 11 | SKIP 64 | PASS 286 ] ══ Skipped tests (64) ══════════════════════════════════════════════════════════ • On CRAN (64): 'test-blrm_exnex.R:74:1', 'test-blrm_exnex.R:79:1', 'test-blrm_exnex.R:84:1', 'test-blrm_exnex.R:90:3', 'test-blrm_exnex.R:98:3', 'test-blrm_exnex.R:106:3', 'test-blrm_exnex.R:114:3', 'test-blrm_exnex.R:214:3', 'test-blrm_exnex.R:366:3', 'test-blrm_exnex.R:445:3', 'test-blrm_exnex.R:542:3', 'test-blrm_exnex.R:669:3', 'test-blrm_exnex.R:873:3', 'test-blrm_exnex.R:893:3', 'test-blrm_exnex.R:913:3', 'test-blrm_exnex.R:1273:3', 'test-blrm_exnex.R:1622:3', 'test-blrm_exnex.R:1706:3', 'test-blrm_exnex.R:1768:3', 'test-blrm_exnex.R:2076:3', 'test-blrm_exnex.R:2371:3', 'test-blrm_exnex.R:2743:3', 'test-blrm_exnex.R:3094:3', 'test-blrm_exnex.R:3173:3', 'test-blrm_exnex.R:3280:3', 'test-blrm_exnex.R:3297:3', 'test-blrm_exnex.R:3310:3', 'test-blrm_exnex.R:3337:3', 'test-blrm_exnex.R:3392:3', 'test-blrm_exnex.R:3430:3', 'test-blrm_exnex.R:3464:3', 'test-blrm_exnex.R:3513:3', 'test-blrm_trial.R:2042:1', 'test-blrm_trial.R:2047:1', 'test-blrm_trial.R:2052:1', 'test-critical_quantile.R:14:3', 'test-critical_quantile.R:76:3', 'test-critical_quantile.R:145:3', 'test-critical_quantile.R:191:3', 'test-plot_toxicity_curve.R:10:3', 'test-plot_toxicity_curve.R:104:3', 'test-plot_toxicity_curve.R:155:3', 'test-plot_toxicity_curve.R:168:3', 'test-plot_toxicity_curve.R:198:3', 'test-plot_toxicity_curve.R:269:7', 'test-plot_toxicity_curve.R:269:7', 'test-plot_toxicity_curve.R:269:7', 'test-plot_toxicity_intervals.R:11:3', 'test-plot_toxicity_intervals.R:70:3', 'test-plot_toxicity_intervals.R:90:3', 'test-plot_toxicity_intervals.R:102:3', 'test-plot_toxicity_intervals.R:131:3', 'test-plot_toxicity_intervals.R:159:7', 'test-plot_toxicity_intervals.R:159:7', 'test-plot_toxicity_intervals.R:159:7', 'test-plot_toxicity_intervals_stacked.R:12:3', 'test-plot_toxicity_intervals_stacked.R:86:3', 'test-plot_toxicity_intervals_stacked.R:125:3', 'test-plot_toxicity_intervals_stacked.R:165:3', 'test-plot_toxicity_intervals_stacked.R:258:3', 'test-plot_toxicity_intervals_stacked.R:342:7', 'test-plot_toxicity_intervals_stacked.R:342:7', 'test-plot_toxicity_intervals_stacked.R:342:7', 'test-plot_toxicity_intervals_stacked.R:373:3' [ FAIL 0 | WARN 11 | SKIP 64 | PASS 286 ] > > proc.time() user system elapsed 38.73 1.42 40.15