R version 4.5.0 alpha (2025-03-15 r87984 ucrt) Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(OncoBayes2) Loading required package: RBesT This is RBesT version 1.8.1 (released 2025-01-20, git-sha 5048c0b) This is OncoBayes2 version 0.9.1 (released 2025-03-17, git-sha c2fb970) > > test_check("OncoBayes2") Loading required package: StanHeaders rstan version 2.32.7 (Stan version 2.32.2) For execution on a local, multicore CPU with excess RAM we recommend calling options(mc.cores = parallel::detectCores()). To avoid recompilation of unchanged Stan programs, we recommend calling rstan_options(auto_write = TRUE) For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions, change `threads_per_chain` option: rstan_options(threads_per_chain = 1) Do not specify '-march=native' in 'LOCAL_CPPFLAGS' or a Makevars file Tests running with fake sampling Attaching package: 'tibble' The following object is masked from 'package:assertthat': has_name Attaching package: 'tidyr' The following object is masked from 'package:rstan': extract The following object is masked from 'package:testthat': matches Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Tests running with fake sampling No stratum defined - assigning all groups to single stratum "all" No stratum defined - assigning all groups to single stratum "all" No stratum defined - assigning all groups to single stratum "all" [ FAIL 0 | WARN 6 | SKIP 63 | PASS 260 ] ══ Skipped tests (63) ══════════════════════════════════════════════════════════ • On CRAN (63): 'test-blrm_exnex.R:67:1', 'test-blrm_exnex.R:72:1', 'test-blrm_exnex.R:77:1', 'test-blrm_exnex.R:83:3', 'test-blrm_exnex.R:91:3', 'test-blrm_exnex.R:99:3', 'test-blrm_exnex.R:107:3', 'test-blrm_exnex.R:153:3', 'test-blrm_exnex.R:256:3', 'test-blrm_exnex.R:336:3', 'test-blrm_exnex.R:434:3', 'test-blrm_exnex.R:515:3', 'test-blrm_exnex.R:618:3', 'test-blrm_exnex.R:627:3', 'test-blrm_exnex.R:637:3', 'test-blrm_exnex.R:834:3', 'test-blrm_exnex.R:1040:5', 'test-blrm_exnex.R:1119:5', 'test-blrm_exnex.R:1176:5', 'test-blrm_exnex.R:1328:5', 'test-blrm_exnex.R:1466:3', 'test-blrm_exnex.R:1643:3', 'test-blrm_exnex.R:1807:3', 'test-blrm_exnex.R:1877:3', 'test-blrm_exnex.R:1965:3', 'test-blrm_exnex.R:1973:3', 'test-blrm_exnex.R:1981:3', 'test-blrm_exnex.R:1993:3', 'test-blrm_exnex.R:2036:3', 'test-blrm_exnex.R:2070:3', 'test-blrm_exnex.R:2101:3', 'test-blrm_trial.R:1471:1', 'test-blrm_trial.R:1476:1', 'test-blrm_trial.R:1481:1', 'test-critical_quantile.R:14:3', 'test-critical_quantile.R:64:3', 'test-critical_quantile.R:118:3', 'test-critical_quantile.R:142:3', 'test-plot_toxicity_curve.R:12:5', 'test-plot_toxicity_curve.R:107:5', 'test-plot_toxicity_curve.R:155:5', 'test-plot_toxicity_curve.R:172:3', 'test-plot_toxicity_curve.R:192:3', 'test-plot_toxicity_curve.R:245:5', 'test-plot_toxicity_curve.R:245:5', 'test-plot_toxicity_curve.R:245:5', 'test-plot_toxicity_intervals.R:13:5', 'test-plot_toxicity_intervals.R:80:5', 'test-plot_toxicity_intervals.R:102:5', 'test-plot_toxicity_intervals.R:116:3', 'test-plot_toxicity_intervals.R:143:3', 'test-plot_toxicity_intervals.R:167:5', 'test-plot_toxicity_intervals.R:167:5', 'test-plot_toxicity_intervals.R:167:5', 'test-plot_toxicity_intervals_stacked.R:15:5', 'test-plot_toxicity_intervals_stacked.R:87:5', 'test-plot_toxicity_intervals_stacked.R:125:5', 'test-plot_toxicity_intervals_stacked.R:164:3', 'test-plot_toxicity_intervals_stacked.R:239:3', 'test-plot_toxicity_intervals_stacked.R:301:5', 'test-plot_toxicity_intervals_stacked.R:301:5', 'test-plot_toxicity_intervals_stacked.R:301:5', 'test-plot_toxicity_intervals_stacked.R:325:5' [ FAIL 0 | WARN 6 | SKIP 63 | PASS 260 ] > > proc.time() user system elapsed 19.40 0.71 20.10