* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/OmopViewer.Rcheck’ * using R Under development (unstable) (2024-11-26 r87383) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-1) 14.2.0 GNU Fortran (Debian 14.2.0-1) 14.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘OmopViewer/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘OmopViewer’ version ‘0.2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/6s] NOTE Maintainer: ‘Martí Català ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: OMOP (3:18, 27:49) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-11-13 as issues were not corrected in time. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘OmopViewer’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s/4s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [2s/2s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [16s/9s] ERROR Running ‘testthat.R’ [15s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(OmopViewer) > > test_check("OmopViewer") Starting 2 test processes [ FAIL 2 | WARN 11 | SKIP 13 | PASS 62 ] ══ Skipped tests (13) ══════════════════════════════════════════════════════════ • On CRAN (12): 'test-background.R:20:3', 'test-background.R:48:3', 'test-packagesSupported.R:2:3', 'test-packagesSupported.R:66:3', 'test-packagesSupported.R:172:3', 'test-packagesSupported.R:245:3', 'test-packagesSupported.R:278:3', 'test-summary.R:15:3', 'test-appStatic.R:33:3', 'test-appStatic.R:45:3', 'test-appStatic.R:64:3', 'test-appStatic.R:246:3' • manual test (1): 'test-functions.R:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-appStatic.R:73:3'): order tabs ───────────────────────────────── Error in `loadNamespace(x)`: there is no package called 'omock' Backtrace: ▆ 1. └─base::loadNamespace(x) at test-appStatic.R:73:3 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 3. └─base (local) withOneRestart(expr, restarts[[1L]]) 4. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-appStatic.R:255:3'): check preprocess file works ─────────────── Error in `loadNamespace(x)`: there is no package called 'omock' Backtrace: ▆ 1. └─base::loadNamespace(x) at test-appStatic.R:255:3 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 3. └─base (local) withOneRestart(expr, restarts[[1L]]) 4. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 2 | WARN 11 | SKIP 13 | PASS 62 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘supported_result_type.Rmd’ using rmarkdown Quitting from lines 20-34 [unnamed-chunk-2] (supported_result_type.Rmd) Error: processing vignette 'supported_result_type.Rmd' failed with diagnostics: there is no package called 'gt' --- failed re-building ‘supported_result_type.Rmd’ SUMMARY: processing the following file failed: ‘supported_result_type.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE