Package check result: ERROR Check: examples, Result: NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed summariseOmopSnapshot 5.466 0.200 5.625 tableOmopSnapshot 5.110 0.073 5.099 Check: re-building of vignette outputs, Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘A-summarise_clinical_tables_records.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-9-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79988 bytes Input file size = 80174 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79818 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 78191 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 78191 Output IDAT size = 78191 bytes (1797 bytes decrease) Output file size = 78269 bytes (1905 bytes = 2.38% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-10-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76018 bytes Input file size = 76204 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 75030 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 73625 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 73625 Output IDAT size = 73625 bytes (2393 bytes decrease) Output file size = 73703 bytes (2501 bytes = 3.28% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-11-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 214191 bytes Input file size = 214581 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 175821 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 175821 Output IDAT size = 175821 bytes (38370 bytes decrease) Output file size = 175899 bytes (38682 bytes = 18.03% decrease) ** Processing: /home/hornik/tmp/CRAN_special_noSuggests/OmopSketch.Rcheck/vign_test/OmopSketch/vignettes/A-summarise_clinical_tables_records_files/figure-html/unnamed-chunk-13-1.png 1344x960 pixels, 3x8 bits/pixel, RGB Input IDAT size = 197186 bytes Input file size = 197552 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 191792 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 191792 Output IDAT size = 191792 bytes (5394 bytes decrease) Output file size = 191870 bytes (5682 bytes = 2.88% decrease) --- finished re-building ‘A-summarise_clinical_tables_records.Rmd’ --- re-building ‘B-summarise_concept_counts.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Quitting from lines 37-51 [unnamed-chunk-2] (B-summarise_concept_counts.Rmd) Error: processing vignette 'B-summarise_concept_counts.Rmd' failed with diagnostics: there is no package called 'CodelistGenerator' --- failed re-building ‘B-summarise_concept_counts.Rmd’ --- re-building ‘C-summarise_pop_characteristics.Rmd’ using rmarkdown trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB --- finished re-building ‘C-summarise_pop_characteristics.Rmd’ SUMMARY: processing the following file failed: ‘B-summarise_concept_counts.Rmd’ Error: Vignette re-building failed. Execution halted