* installing *source* package 'OmicFlow' ... ** this is package 'OmicFlow' version '1.4.0' ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 14.2.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from RcppExports.cpp:4: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c branches.cpp -o branches.o In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from branches.h:4, from branches.cpp:1: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c distances.cpp -o distances.o In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from distances.h:4, from distances.cpp:1: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:860: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp: In instantiation of 'static typename T1::elem_type arma::spop_accu::apply(const arma::SpBase&) [with T1 = arma::SpGlue, arma::SpMat, arma::spglue_min>; typename T1::elem_type = double; typename T1::elem_type = double]': D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_accu.hpp:64:26: required from 'auto arma::accu(const T1&, const typename enable_if::value>::result*) [with T1 = SpGlue, SpMat, spglue_min>; typename enable_if::value>::result = int]' 64 | return spop_accu::apply(expr); | ~~~~~~~~~~~~~~~~^~~~~~ distances.cpp:32:28: required from here 32 | double num = arma::accu(arma::min(A,B)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp:47:74: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 47 | const SpSubview& sv = reinterpret_cast< const SpSubview& >(P.Q); | ~~^ D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp: In instantiation of 'static typename T1::elem_type arma::spop_accu::apply(const arma::SpBase&) [with T1 = arma::SpGlue, arma::SpMat, arma::spglue_max>; typename T1::elem_type = double; typename T1::elem_type = double]': D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_accu.hpp:64:26: required from 'auto arma::accu(const T1&, const typename enable_if::value>::result*) [with T1 = SpGlue, SpMat, spglue_max>; typename enable_if::value>::result = int]' 64 | return spop_accu::apply(expr); | ~~~~~~~~~~~~~~~~^~~~~~ distances.cpp:33:30: required from here 33 | double denum = arma::accu(arma::max(A,B)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~ D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/spop_accu_meat.hpp:47:74: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 47 | const SpSubview& sv = reinterpret_cast< const SpSubview& >(P.Q); | ~~^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppParallel/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include' -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interface.cpp -o interface.o In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:26, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32, from interface.cpp:1: D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported' 373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported") | ^ g++ -std=gnu++17 -shared -s -static-libgcc -o OmicFlow.dll tmp.def RcppExports.o branches.o distances.o interface.o -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.6/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-OmicFlow/00new/OmicFlow/libs/x64 ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicFlow)