test_that("Testing UniFrac ordination", { taxa <- metagenomics$new( biomData = "input/metagenomics/biom_with_taxonomy_hdf5.biom", metaData = "input/metagenomics/metadata.tsv", treeData = "input/metagenomics/rooted_tree.newick" ) res <- taxa$ordination( metric = "unifrac", method = "pcoa", group_by = "CONTRAST_sex", weighted = TRUE, normalize = TRUE, cpus = 1 ) expect_snapshot(res$anova_data) expect_snapshot(res$dist) expect_snapshot(res$pcs) })