downloading reverse dependencies ... downloading eDITH_0.3.0.tar.gz ... ok downloading rivnet_0.4.0.tar.gz ... ok installing dependencies ‘adespatial’, ‘BayesianTools’, ‘OCNet’, ‘rivnet’, ‘traudem’ also installing the dependencies ‘adegraphics’, ‘adephylo’ begin installing package ‘adegraphics’ begin installing package ‘adephylo’ begin installing package ‘BayesianTools’ begin installing package ‘traudem’ * installing *source* package ‘traudem’ ... ** package ‘traudem’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (traudem) * installing *source* package ‘adephylo’ ... ** package ‘adephylo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNWaQkH/R.INSTALL38a53a7b1f78ab/adephylo/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o adesub.c: In function ‘getpermutation’: adesub.c:479:15: warning: unused variable ‘seed’ [-Wunused-variable] 479 | int i, n, seed; | ^~~~ gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distPhylo.c -o distPhylo.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phylog.c -o phylog.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sptips.c -o sptips.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o adephylo.so adesub.o distPhylo.o init.o misc.o phylog.o sptips.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNWaQkH/R.INSTALL38a53a7b1f78ab/adephylo/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-adephylo/00new/adephylo/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adephylo) * installing *source* package ‘adegraphics’ ... ** package ‘adegraphics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adegraphics) begin installing package ‘adespatial’ * installing *source* package ‘BayesianTools’ ... ** package ‘BayesianTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFCzKls/R.INSTALL38a53e4582e5dd/BayesianTools/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vsem.cpp -o vsem.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o BayesianTools.so RcppExports.o init.o vsem.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFCzKls/R.INSTALL38a53e4582e5dd/BayesianTools/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-BayesianTools/00new/BayesianTools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesianTools) * installing *source* package ‘adespatial’ ... ** package ‘adespatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcFRkqT/R.INSTALL38a63e7de5732f/adespatial/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o betadiv.c: In function ‘euclidean’: betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 36 | for (i = 0; i < I; i++) | ^~~ In file included from betadiv.c:7: /home/hornik/tmp/R-d-gcc-13/include/Rinternals.h:372:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 372 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’ 42 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘manhattan’: betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 476 | for (i=0; i= 3.6) Imports: fields, spam, rgl, methods, igraph, Rcpp (>= 1.0.10), adespatial, spdep, terra LinkingTo: Rcpp Timings: user system elapsed OCNet 268.016 17.547 287.036 Results: Check status summary: OK Source packages 1 Reverse depends 2 Check results summary: OCNet ... OK rdepends_eDITH ... OK rdepends_rivnet ... OK