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Type 'q()' to quit R. > library(testthat) > library(NiLeDAM) *********************************************************** Welcome to the NiLeDAM package An online graphical interface is available at: http://shiny.nathalievilla.org/niledam or run: liveNILEDAM() Citation details with citation('NiLeDAM') For questions/remarks, please contact the maintainer: nathalie.vialaneix@inrae.fr *********************************************************** > > test_check("NiLeDAM") Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Age estimation... MC simulations... (it might take a while if 'nloops' is large...) 32 ages and confidence intervals estimated from 10 bootstrap samples. Summary: Min. 1st Qu. Median Mean 3rd Qu. Max. 447.0 491.2 505.5 515.3 546.5 598.0 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 1 population(s). The ages are found to be unlikely coming from 1 population(s) at level 5 %. Chi2 test statistic: 48.38098 ~ df: 31 Test if the 32 estimated ages are coming from 3 population(s). The ages are not found to be unlikely coming from 3 population(s) at level 5 %. Chi2 test statistic: 7.993151 ~ df: 29 Estimated ages: 563 505 476 Population numbers: 1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from 3 population(s). The ages are not found to be unlikely coming from 3 population(s) at level 5 %. Chi2 test statistic: 7.993151 ~ df: 29 Estimated ages: 563 505 476 Population numbers: 1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from 3 population(s). The ages are not found to be unlikely coming from 3 population(s) at level 5 %. Chi2 test statistic: 7.993151 ~ df: 29 Estimated ages: 563 505 476 Population numbers: 1 3 1 2 1 1 1 1 3 2 3 2 2 2 3 1 2 2 2 1 1 2 3 2 3 2 3 3 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 1 2 3 population(s). The ages are found to be likely coming from 2 population(s) at level 5 %. Chi2 test statistic: 21.49746 ~ df: 30 Estimated ages: 563 494 Population numbers: 1 2 1 2 1 1 1 1 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 2Test if the 32 estimated ages are coming from 4 5 6 population(s). No valid number of populations in the sequence tested. ( 4 to 6 ) The ages are not found to be likely coming from 4 population(s) at level 5 %. Chi2 test statistic: 12.62986 ~ df: 28 Estimated ages: 563 520 489 NaN Population numbers: 1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 Test if the 32 estimated ages are coming from 4 5 6 population(s). No valid number of populations in the sequence tested. ( 4 to 6 ) The ages are not found to be likely coming from 4 population(s) at level 5 %. Chi2 test statistic: 12.62986 ~ df: 28 Estimated ages: 563 520 489 NaN Population numbers: 1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 Test if the 32 estimated ages are coming from 4 5 6 population(s). No valid number of populations in the sequence tested. ( 4 to 6 ) The ages are not found to be likely coming from 4 population(s) at level 5 %. Chi2 test statistic: 12.62986 ~ df: 28 Estimated ages: 563 520 489 NaN Population numbers: 1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 Test if the 32 estimated ages are coming from 4 5 6 population(s). No valid number of populations in the sequence tested. ( 4 to 6 ) The ages are not found to be likely coming from 4 population(s) at level 5 %. Chi2 test statistic: 12.62986 ~ df: 28 Estimated ages: 563 520 489 NaN Population numbers: 1 3 1 3 1 1 1 1 3 3 3 3 2 2 3 1 3 2 3 1 1 3 3 3 3 3 3 3 3 3 2 3 [ FAIL 0 | WARN 10 | SKIP 0 | PASS 53 ] [ FAIL 0 | WARN 10 | SKIP 0 | PASS 53 ] > > proc.time() user system elapsed 4.14 0.54 4.65