* using log directory ‘/srv/hornik/tmp/CRAN_pretest/NetID.Rcheck’
* using R Under development (unstable) (2025-09-01 r88761)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3+b1)
    Debian flang-new version 19.1.7 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘NetID/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NetID’ version ‘0.1.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Weixu Wang <weixu.wang@helmholtz-muenchen.de>’

New submission

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Weixu",
                      family = "Wang",
                      role = c("aut", "cre"),
                      email = "weixu.wang@helmholtz-muenchen.de"),
               person(given = "Dominic",
                      family = "Grün",
                      role = "aut"))
as necessary.

Size of tarball: 17235540 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  R/.ipynb_checkpoints
  vignettes/.ipynb_checkpoints
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  R/.ipynb_checkpoints
  vignettes/.ipynb_checkpoints
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NetID’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
  ‘CytoTRACE’ ‘SCENT’
'loadNamespace' or 'requireNamespace' calls not declared from:
  ‘CytoTRACE’ ‘SCENT’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  ‘BiocStyle’ ‘cowplot’
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘NetID.Rmd’ using rmarkdown
Error: processing vignette 'NetID.Rmd' failed with diagnostics:
there is no package called ‘BiocStyle’
--- failed re-building ‘NetID.Rmd’

SUMMARY: processing the following file failed:
  ‘NetID.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 3 NOTEs