* using log directory 'd:/RCompile/CRANincoming/R-devel/NaileR.Rcheck'
* using R Under development (unstable) (2024-07-15 r86902 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'NaileR/DESCRIPTION' ... OK
* this is package 'NaileR' version '1.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Sébastien Lê <sebastien.le@institut-agro.fr>'

New submission

Possibly misspelled words in DESCRIPTION:
  FactoMineR's (9:109)
  catdes (9:145)
  condes (9:153)
  descfreq (9:161)
  ollamar (9:175)

Package has a VignetteBuilder field but no prebuilt vignette index.

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/web/licenses (moved to https://cran.r-project.org/web/licenses/)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://cran.r-project.org/web/packages/FactoMineR/index.html
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/ollamar/index.html
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid file URI:
  URI: doc
    From: README.md
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Vignette dependency required without any vignettes:: 'knitr'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'NaileR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'agri_studies.Rd':
  \examples lines wider than 100 characters:
     res_agri <- nail_condes(agri_work, num.var = 1, introduction = "These data were collected after a survey on students' expectations of a ... [TRUNCATED]

Rd file 'beard_cont.Rd':
  \examples lines wider than 100 characters:
     res_beard <- nail_descfreq(beard_cont, introduction = 'A survey was conducted about beards and 8 types of beards were described. In the ... [TRUNCATED]

Rd file 'beard_wide.Rd':
  \examples lines wider than 100 characters:
     res <- nail_sort(beard_wide[,1:5], name_size = 3, stimulus_id = "beard", introduction = "As a barber, you make recommendations based on ... [TRUNCATED]

Rd file 'boss.Rd':
  \examples lines wider than 100 characters:
     intro = 'A study on "the ideal boss" was led on 73 participants. The study had 2 parts. In the first part, participants were given stat ... [TRUNCATED]
     requ = "Please describe, for each group, their ideal boss. Then, give each group a new name, based on your conclusions."
     res_boss <- nail_catdes(don_clust_boss, num.var = 40, introduction = intro, request = requ, isolate.groups = FALSE, drop.negative = TRU ... [TRUNCATED]

Rd file 'dist_mat_llm.Rd':
  \examples lines wider than 100 characters:
     res_iris <- nail_catdes(iris, num.var = 5, introduction = "A study measured various parts of iris flowers from 3 different species: set ... [TRUNCATED]

Rd file 'dist_ref_llm.Rd':
  \examples lines wider than 100 characters:
     res_iris <- nail_catdes(iris, num.var = 5, introduction = "A study measured various parts of iris flowers from 3 different species: set ... [TRUNCATED]

Rd file 'glossophobia.Rd':
  \examples lines wider than 100 characters:
     res_mca_phobia <- FactoMineR::MCA(glossophobia, quali.sup = 26:41, level.ventil = 0.05, graph = FALSE)
     res_phobia <- nail_condes(phobia_work, num.var = 1, introduction = "These data were collected after a survey on participants' feelings  ... [TRUNCATED]

Rd file 'local_food.Rd':
  \examples lines wider than 100 characters:
     res_food <- nail_catdes(don_clust_food, num.var = ncol(don_clust_food), introduction = 'A study on sustainable food systems was led on  ... [TRUNCATED]

Rd file 'nail_catdes.Rd':
  \usage lines wider than 90 characters:
         "Based on the results, please describe what characterizes the individuals of each group and what sets them apart from the other gro ... [TRUNCATED]
  \examples lines wider than 100 characters:
     res_iris <- nail_catdes(iris, num.var = 5, introduction = "A study measured various parts of iris flowers from 3 different species: set ... [TRUNCATED]
     res_waste <- nail_catdes(don_clust_waste, num.var = ncol(don_clust_waste), introduction = 'These data were collected after a survey on  ... [TRUNCATED]
     res_food <- nail_catdes(don_clust_food, num.var = ncol(don_clust_food), introduction = 'A study on sustainable food systems was led on  ... [TRUNCATED]

Rd file 'nail_condes.Rd':
  \usage lines wider than 90 characters:
         "Please explain what differentiates individuals from both sides of the scale. Then give a name to the scale, and briefly explain wh ... [TRUNCATED]
  \examples lines wider than 100 characters:
     names(decathlon) <- c('Time taken to complete the 100m', 'Distance reached for the long jump', 'Distance reached for the shot put', 'He ... [TRUNCATED]
     res_deca <- nail_condes(deca_work, num.var = 1, quanti.threshold = 1, quanti.cat = c('High', 'Low', 'Average'), introduction = "A study ... [TRUNCATED]
     res_agri <- nail_condes(agri_work, num.var = 1, introduction = "These data were collected after a survey on students' expectations of a ... [TRUNCATED]
     res_phobia <- nail_condes(phobia_work, num.var = 1, introduction = "These data were collected after a survey on participants' feelings  ... [TRUNCATED]
     res_beard <- nail_condes(beard_work, num.var = 1, quanti.threshold = 0.5, quanti.cat = c('Very often', 'Never', 'Sometimes'), introduct ... [TRUNCATED]

Rd file 'nail_descfreq.Rd':
  \examples lines wider than 100 characters:
     res_beard <- nail_descfreq(beard_cont, introduction = 'A survey was conducted about beards and 8 types of beards were described. I will ... [TRUNCATED]
     res_beard <- nail_descfreq(beard_cont, introduction = 'A survey was conducted about beards and 8 types of beards were described. In the ... [TRUNCATED]
     # for the following code to work, the response must have the beards' new names with this format: **B1: The Nice beard**, etc.
     rownames(children) <- c('No education', 'Elementary school', 'Middle school', 'High school', 'University')
     res_children <- nail_descfreq(children, introduction = 'The data used here is a contingency table that summarizes the answers given by  ... [TRUNCATED]

Rd file 'nail_sort.Rd':
  \examples lines wider than 100 characters:
     res <- nail_sort(beard_wide[,1:5], name_size = 3, stimulus_id = "beard", introduction = "As a barber, you make recommendations based on ... [TRUNCATED]

Rd file 'nutriscore.Rd':
  \examples lines wider than 100 characters:
     res_mca_nutriscore <- MCA(nutriscore, quali.sup = 17:36, ncp = 15, level.ventil = 0.05, graph = FALSE)
     res_waste <- nail_catdes(don_clust_nutriscore, num.var = ncol(don_clust_nutriscore), introduction = 'These data were collected after a  ... [TRUNCATED]

Rd file 'waste.Rd':
  \examples lines wider than 100 characters:
     res_waste <- nail_catdes(don_clust_waste, num.var = ncol(don_clust_waste), introduction = 'These data were collected after a survey on  ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [15s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 NOTEs