* using log directory ‘/srv/hornik/tmp/CRAN/NPRED.Rcheck’ * using R Under development (unstable) (2024-07-10 r86888) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1+b1) Debian flang-new version 18.1.8 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘NPRED/DESCRIPTION’ ... OK * this is package ‘NPRED’ version ‘1.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/7s] NOTE Maintainer: ‘Ze Jiang ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Jha (26:316) Mehrotra (26:231, 26:292, 26:373) Sharma (26:219, 26:280, 26:389) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-06-13 as issues were not corrected in time. Use of deleted Fortran features. Suggests or Enhances not in mainstream repositories: WASP * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘WASP’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘NPRED’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [12s/12s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘NPRED.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/NPRED.Rcheck/vign_test/NPRED/vignettes/NPRED_files/figure-html/knn-1.png 864x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 84137 bytes Input file size = 84335 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 80458 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 80458 Output IDAT size = 80458 bytes (3679 bytes decrease) Output file size = 80536 bytes (3799 bytes = 4.50% decrease) ** Processing: /srv/hornik/tmp/CRAN/NPRED.Rcheck/vign_test/NPRED/vignettes/NPRED_files/figure-html/knn-2.png 864x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57483 bytes Input file size = 57645 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46672 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46672 Output IDAT size = 46672 bytes (10811 bytes decrease) Output file size = 46750 bytes (10895 bytes = 18.90% decrease) ** Processing: /srv/hornik/tmp/CRAN/NPRED.Rcheck/vign_test/NPRED/vignettes/NPRED_files/figure-html/weights-1.png 864x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 74810 bytes Input file size = 74996 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 72986 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 72616 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 72616 Output IDAT size = 72616 bytes (2194 bytes decrease) Output file size = 72694 bytes (2302 bytes = 3.07% decrease) Quitting from lines 158-231 [exp] (NPRED.Rmd) Error: processing vignette 'NPRED.Rmd' failed with diagnostics: there is no package called 'WASP' --- failed re-building ‘NPRED.Rmd’ SUMMARY: processing the following file failed: ‘NPRED.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs