downloading reverse dependencies ... downloading landmulti_0.5.0.tar.gz ... ok downloading MaxMC_0.1.2.tar.gz ... ok downloading PMwR_1.1-0.tar.gz ... ok downloading MSCMT_1.4.0.tar.gz ... ok downloading neighbours_0.1-3.tar.gz ... ok installing dependencies ‘cmaes’, ‘datetimeutils’, ‘fUnitRoots’, ‘landpred’, ‘LowRankQP’, ‘NMOF’, ‘orgutils’, ‘PMwR’, ‘Rmalschains’, ‘soma’, ‘Synth’ also installing the dependencies ‘ore’, ‘reportr’ begin installing package ‘ore’ begin installing package ‘datetimeutils’ begin installing package ‘NMOF’ begin installing package ‘landpred’ begin installing package ‘fUnitRoots’ begin installing package ‘orgutils’ begin installing package ‘Synth’ begin installing package ‘cmaes’ begin installing package ‘Rmalschains’ begin installing package ‘LowRankQP’ * installing *source* package ‘orgutils’ ... ** this is package ‘orgutils’ version ‘0.5-1’ ** package ‘orgutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orgutils) * installing *source* package ‘cmaes’ ... ** this is package ‘cmaes’ version ‘1.0-12’ ** package ‘cmaes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmaes) * installing *source* package ‘LowRankQP’ ... ** this is package ‘LowRankQP’ version ‘1.0.6’ ** package ‘LowRankQP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzQ6fhO/R.INSTALL1e16404cb08b0/LowRankQP/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP.c -o LowRankQP.o LowRankQP.c: In function ‘LowRankQP’: LowRankQP.c:835:9: warning: ‘dbeta’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:745:13: note: ‘dbeta’ was declared here 745 | double *dbeta; | ^~~~~ LowRankQP.c:835:9: warning: ‘r2’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:757:13: note: ‘r2’ was declared here 757 | double *r2; | ^~ LowRankQP.c:857:9: warning: ‘R’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:763:13: note: ‘R’ was declared here 763 | double *R; | ^ LowRankQP.c:857:9: warning: ‘buffMxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:766:13: note: ‘buffMxP’ was declared here 766 | double *buffMxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:767:13: note: ‘buffPxP’ was declared here 767 | double *buffPxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:768:13: note: ‘buffPx1’ was declared here 768 | double *buffPx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘M’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:770:13: note: ‘M’ was declared here 770 | double *M; | ^ LowRankQP.c:857:9: warning: ‘pivN’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:771:13: note: ‘pivN’ was declared here 771 | int *pivN; | ^~~~ LowRankQP.c:846:9: warning: ‘buffNxM’ may be used uninitialized [-Wmaybe-uninitialized] 846 | LRQPFactorize( n, m, method, Q, D, M, pivN, buffNxM, P, Beta, Lambda, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 | LambdaTemp, T ); | ~~~~~~~~~~~~~~~ LowRankQP.c:773:13: note: ‘buffNxM’ was declared here 773 | double *buffNxM; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffMx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:774:13: note: ‘buffMx1’ was declared here 774 | double *buffMx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘P’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:776:13: note: ‘P’ was declared here 776 | double *P; | ^ LowRankQP.c:857:9: warning: ‘Beta’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:777:13: note: ‘Beta’ was declared here 777 | double *Beta; | ^~~~ LowRankQP.c:857:9: warning: ‘Lambda’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:778:13: note: ‘Lambda’ was declared here 778 | double *Lambda; | ^~~~~~ LowRankQP.c:857:9: warning: ‘LambdaTemp’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:779:13: note: ‘LambdaTemp’ was declared here 779 | double *LambdaTemp; | ^~~~~~~~~~ LowRankQP.c:857:9: warning: ‘T’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:780:13: note: ‘T’ was declared here 780 | double *T; | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP_init.c -o LowRankQP_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o LowRankQP.so LowRankQP.o LowRankQP_init.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzQ6fhO/R.INSTALL1e16404cb08b0/LowRankQP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LowRankQP/00new/LowRankQP/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LowRankQP) * installing *source* package ‘datetimeutils’ ... ** this is package ‘datetimeutils’ version ‘0.6-5’ ** package ‘datetimeutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datetimeutils) * installing *source* package ‘Synth’ ... ** this is package ‘Synth’ version ‘1.1-9’ ** package ‘Synth’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Synth) * installing *source* package ‘fUnitRoots’ ... ** this is package ‘fUnitRoots’ version ‘4040.81’ ** package ‘fUnitRoots’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdKKn5a/R.INSTALL1e16396ad92c0f/fUnitRoots/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c UnitRootMacKinnon.f -o UnitRootMacKinnon.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fUnitRoots.so UnitRootMacKinnon.o init.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdKKn5a/R.INSTALL1e16396ad92c0f/fUnitRoots/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fUnitRoots/00new/fUnitRoots/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fUnitRoots) * installing *source* package ‘landpred’ ... ** this is package ‘landpred’ version ‘1.2’ ** package ‘landpred’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (landpred) * installing *source* package ‘NMOF’ ... ** this is package ‘NMOF’ version ‘2.11-0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NMOF) begin installing package ‘PMwR’ * installing *source* package ‘PMwR’ ... ** this is package ‘PMwR’ version ‘1.1-0’ ** package ‘PMwR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PMwR) * installing *source* package ‘ore’ ... ** this is package ‘ore’ version ‘1.7.5.1’ ** package ‘ore’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for sys/times.h... yes checking for stdint.h... (cached) yes checking size of int... 4 checking size of short... 2 checking size of long... 8 checking size of void*... 8 checking size of long long... 8 checking for an ANSI C-conforming const... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working memcmp... yes configure: creating ./config.status config.status: creating src/onig/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp78fXnG/R.INSTALL1e16346de165b2/ore/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c compile.c -o compile.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c escape.c -o escape.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c match.c -o match.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split.c -o split.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subst.c -o subst.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c text.c -o text.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wcwidth.c -o wcwidth.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regcomp.c -o onig/regcomp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regenc.c -o onig/regenc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regerror.c -o onig/regerror.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regexec.c -o onig/regexec.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regext.c -o onig/regext.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/reggnu.c -o onig/reggnu.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regparse.c -o onig/regparse.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regposerr.c -o onig/regposerr.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regposix.c -o onig/regposix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regsyntax.c -o onig/regsyntax.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regtrav.c -o onig/regtrav.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/regversion.c -o onig/regversion.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/st.c -o onig/st.o onig/st.c:2169:1: warning: ‘st_rehash’ defined but not used [-Wunused-function] 2169 | st_rehash(st_table *tab) | ^~~~~~~~~ onig/st.c:2046:1: warning: ‘st_expand_table’ defined but not used [-Wunused-function] 2046 | st_expand_table(st_table *tab, st_index_t siz) | ^~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/ascii.c -o onig/enc/ascii.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/big5.c -o onig/enc/big5.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/cp949.c -o onig/enc/cp949.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/euc_jp.c -o onig/enc/euc_jp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/euc_kr.c -o onig/enc/euc_kr.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/euc_tw.c -o onig/enc/euc_tw.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/gb18030.c -o onig/enc/gb18030.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/gbk.c -o onig/enc/gbk.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_1.c -o onig/enc/iso_8859_1.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_10.c -o onig/enc/iso_8859_10.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_11.c -o onig/enc/iso_8859_11.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_13.c -o onig/enc/iso_8859_13.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_14.c -o onig/enc/iso_8859_14.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_15.c -o onig/enc/iso_8859_15.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_16.c -o onig/enc/iso_8859_16.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_2.c -o onig/enc/iso_8859_2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_3.c -o onig/enc/iso_8859_3.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_4.c -o onig/enc/iso_8859_4.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_5.c -o onig/enc/iso_8859_5.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_6.c -o onig/enc/iso_8859_6.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_7.c -o onig/enc/iso_8859_7.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_8.c -o onig/enc/iso_8859_8.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/iso_8859_9.c -o onig/enc/iso_8859_9.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/koi8_r.c -o onig/enc/koi8_r.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/koi8_u.c -o onig/enc/koi8_u.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/shift_jis.c -o onig/enc/shift_jis.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/unicode.c -o onig/enc/unicode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/us_ascii.c -o onig/enc/us_ascii.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/utf_16be.c -o onig/enc/utf_16be.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/utf_16le.c -o onig/enc/utf_16le.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/utf_32be.c -o onig/enc/utf_32be.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/utf_32le.c -o onig/enc/utf_32le.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/utf_8.c -o onig/enc/utf_8.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1250.c -o onig/enc/windows_1250.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1251.c -o onig/enc/windows_1251.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1252.c -o onig/enc/windows_1252.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1253.c -o onig/enc/windows_1253.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1254.c -o onig/enc/windows_1254.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_1257.c -o onig/enc/windows_1257.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ionig -Ionig/enc -Ionig/enc/unicode -DUNALIGNED_WORD_ACCESS=0 -DDISABLE_CONNECTIONS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onig/enc/windows_31j.c -o onig/enc/windows_31j.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ore.so compile.o escape.o match.o print.o split.o subst.o text.o wcwidth.o zzz.o onig/regcomp.o onig/regenc.o onig/regerror.o onig/regexec.o onig/regext.o onig/reggnu.o onig/regparse.o onig/regposerr.o onig/regposix.o onig/regsyntax.o onig/regtrav.o onig/regversion.o onig/st.o onig/enc/ascii.o onig/enc/big5.o onig/enc/cp949.o onig/enc/euc_jp.o onig/enc/euc_kr.o onig/enc/euc_tw.o onig/enc/gb18030.o onig/enc/gbk.o onig/enc/iso_8859_1.o onig/enc/iso_8859_10.o onig/enc/iso_8859_11.o onig/enc/iso_8859_13.o onig/enc/iso_8859_14.o onig/enc/iso_8859_15.o onig/enc/iso_8859_16.o onig/enc/iso_8859_2.o onig/enc/iso_8859_3.o onig/enc/iso_8859_4.o onig/enc/iso_8859_5.o onig/enc/iso_8859_6.o onig/enc/iso_8859_7.o onig/enc/iso_8859_8.o onig/enc/iso_8859_9.o onig/enc/koi8_r.o onig/enc/koi8_u.o onig/enc/shift_jis.o onig/enc/unicode.o onig/enc/us_ascii.o onig/enc/utf_16be.o onig/enc/utf_16le.o onig/enc/utf_32be.o onig/enc/utf_32le.o onig/enc/utf_8.o onig/enc/windows_1250.o onig/enc/windows_1251.o onig/enc/windows_1252.o onig/enc/windows_1253.o onig/enc/windows_1254.o onig/enc/windows_1257.o onig/enc/windows_31j.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp78fXnG/R.INSTALL1e16346de165b2/ore/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ore/00new/ore/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ore) begin installing package ‘reportr’ * installing *source* package ‘reportr’ ... ** this is package ‘reportr’ version ‘1.3.1’ ** package ‘reportr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reportr) begin installing package ‘soma’ * installing *source* package ‘soma’ ... ** this is package ‘soma’ version ‘1.2.0’ ** package ‘soma’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (soma) * installing *source* package ‘Rmalschains’ ... ** this is package ‘Rmalschains’ version ‘0.2-10’ ** package ‘Rmalschains’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBeKsdL/R.INSTALL1e163e4db4cb8e/Rmalschains/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ConfigFile.cc -o ConfigFile.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RmalschainsWrapper.cpp -o RmalschainsWrapper.o In file included from RmalschainsWrapper.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R/include/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion] 85 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:190:17: note: in expansion of macro ‘warning’ 190 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:133, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from RmalschainsWrapper.cpp:6: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:191:19: note: recursive call 191 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' 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-I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssga.cc -o ssga.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c statistics.cc -o statistics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c submat.cpp -o submat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c svd.cpp -o svd.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rmalschains.so ConfigFile.o RmalschainsWrapper.o Rmalschains_init.o bandmat.o chc.o cholesky.o cmaes.o cmaesb.o cmaeshan.o config.o cross.o de.o debug.o distance.o domain.o ea.o evalue.o fft.o get_util.o hholder.o hybrid.o hybrid2ph.o iea.o individual.o initind.o jacobi.o jade.o jdebin.o jdelsgo.o jdemc.o jderand.o localsearch.o lsparammem.o malschains.o mts.o mts1.o mts2.o mtsi.o mutation.o myexcept.o newfft.o newmat1.o newmat2.o newmat3.o newmat4.o newmat5.o newmat6.o newmat7.o newmat8.o newmat9.o newmatex.o newmatnl.o newmatrm.o newutil.o nm_misc.o orandom.o origcmaes.o populationchc.o populationjde.o populationjdebin.o populationjdemc.o populationjderand.o populationpso.o populationreal.o problem.o pso.o random.o reducepopulation.o replace.o restart.o running.o sade.o sadeaf.o select.o selectlsimp.o signal.o simplex.o solis.o solisn.o solisn2.o sort.o srandom.o ssga.o statistics.o submat.o svd.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBeKsdL/R.INSTALL1e163e4db4cb8e/Rmalschains/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rmalschains/00new/Rmalschains/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rmalschains) checking NMOF_2.11-0.tar.gz ... checking landmulti_0.5.0.tar.gz ... checking PMwR_1.1-0.tar.gz ... checking MaxMC_0.1.2.tar.gz ... checking MSCMT_1.4.0.tar.gz ... checking neighbours_0.1-3.tar.gz ... Depends: Package: NMOF Depends: R (>= 3.5) Imports: grDevices, graphics, parallel, stats, utils Timings: user system elapsed NMOF 95.378 8.065 105.369 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 4 Check results summary: NMOF ... OK rdepends_landmulti ... OK rdepends_MaxMC ... NOTE * checking HTML version of manual ... [1s/1s] NOTE rdepends_MSCMT ... OK rdepends_neighbours ... OK rdepends_PMwR ... OK Check results changes: Package: MaxMC Check: HTML version of manual New result: NOTE