* using log directory ‘/srv/hornik/tmp/CRAN_pretest/NMAPropForest.Rcheck’ * using R Under development (unstable) (2025-08-18 r88641) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘NMAPropForest/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘NMAPropForest’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Yanqi Zhang ’ New submission Possibly misspelled words in DESCRIPTION: NMA (10:109) ggplot (11:145) igraph (11:133) netmeta (11:124) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NMAPropForest’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘README.html’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... WARNING Found the following file with non-ASCII characters: R/NMAPropForest.R Portable packages must use only ASCII characters in their R code and NAMESPACE directives, except perhaps in comments. Use \uxxxx escapes for other characters. Function ‘tools::showNonASCIIfile’ can help in finding non-ASCII characters in files. * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING 'library' or 'require' calls not declared from: ‘dplyr’ ‘ggplot2’ ‘grid’ ‘igraph’ ‘meta’ ‘netmeta’ ‘rlist’ ‘scales’ ‘tibble’ 'library' or 'require' calls in package code: ‘dplyr’ ‘ggplot2’ ‘grid’ ‘igraph’ ‘meta’ ‘netmeta’ ‘rlist’ ‘scales’ ‘tibble’ Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] NOTE NMAPropForest : comparisonStreams: warning in matrix(directlist, nc = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol' NMAPropForest : comparisonStreams : initRowGraph: warning in matrix(unlist(dedgeList), nc = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol' NMAPropForest: no visible global function definition for ‘%>%’ NMAPropForest: no visible binding for global variable ‘treat1’ NMAPropForest: no visible binding for global variable ‘treat2’ NMAPropForest : get_theta: no visible global function definition for ‘%>%’ NMAPropForest : get_variance: no visible global function definition for ‘%>%’ NMAPropForest: no visible binding for global variable ‘.’ NMAPropForest: no visible binding for global variable ‘UpperCI’ NMAPropForest: no visible binding for global variable ‘LowerCI’ NMAPropForest: no visible binding for global variable ‘raw_se’ NMAPropForest: no visible binding for global variable ‘weight’ NMAPropForest : comparisonStreams: no visible global function definition for ‘graph_from_edgelist’ NMAPropForest : comparisonStreams : initRowGraph: no visible global function definition for ‘graph_from_edgelist’ NMAPropForest : comparisonStreams : initRowGraph: no visible global function definition for ‘E<-’ NMAPropForest : comparisonStreams : initRowGraph: no visible global function definition for ‘V<-’ NMAPropForest : comparisonStreams : reducePath: no visible global function definition for ‘list.append’ NMAPropForest: no visible global function definition for ‘head’ NMAPropForest : : no visible global function definition for ‘setNames’ NMAPropForest: no visible binding for global variable ‘OrderIndex’ NMAPropForest: no visible binding for global variable ‘EffectSize’ NMAPropForest: no visible binding for global variable ‘Type’ NMAPropForest: no visible binding for global variable ‘size_scaled’ NMAPropForest: no visible binding for global variable ‘xstart’ NMAPropForest: no visible binding for global variable ‘xend’ NMAPropForest: no visible binding for global variable ‘Proportion’ Undefined global functions or variables: %>% . E<- EffectSize LowerCI OrderIndex Proportion Type UpperCI V<- graph_from_edgelist head list.append raw_se setNames size_scaled treat1 treat2 weight xend xstart Consider adding importFrom("stats", "setNames") importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘example_data’ Undocumented data sets: ‘example_data’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [5s/5s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 WARNINGs, 3 NOTEs