* using log directory 'd:/RCompile/CRANincoming/R-devel/NFert.Rcheck' * using R Under development (unstable) (2024-07-02 r86866 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'NFert/DESCRIPTION' ... OK * this is package 'NFert' version '0.0.0.9000' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Michele Croci ' New submission Version contains large components (0.0.0.9000) Non-FOSS package license (`use_mit_license()`, `use_gpl3_license()` or friends to pick a license) Package has a VignetteBuilder field but no prebuilt vignette index. The Title field should be in title case. Current version is: 'Nitrogen fertilization balance' In title case that is: 'Nitrogen Fertilization Balance' DESCRIPTION fields with placeholder content: Description: what the package does (one paragraph). * checking package namespace information ... OK * checking package dependencies ... NOTE Vignette dependency required without any vignettes:: 'knitr' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'NFert' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: `use_mit_license()`, `use_gpl3_license()` or friends to pick a license Standardizable: FALSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'ca.table' 'cb.table' 'coefN_mineralised' 'coefN_readily' 'coef_time' 'e.table' 'mydataset' 'uptake_table' Undocumented data sets: 'ca.table' 'cb.table' 'coefN_mineralised' 'coefN_readily' 'coef_time' 'e.table' 'mydataset' 'uptake_table' All user-level objects in a package should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'immobilization_and_dispersion_losses.Rd' 'B' 'oxygen_availability' 'id_rag' 'ca.table' Undocumented arguments in Rd file 'leaching_loss.Rd' 'oxygen_availability' 'id_rag' 'b1' 'ca.table' 'cb.table' Documented arguments not in \usage in Rd file 'leaching_loss.Rd': 'method' Undocumented arguments in Rd file 'soil_fertility.Rd' 'coefN_readily' 'coefN_mineralised' 'coef_time' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... NOTE Argument items with no description in Rd file 'immobilization_and_dispersion_losses.Rd': 'cb.table' Argument items with no description in Rd file 'leaching_loss.Rd': 'method' * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... OK * DONE Status: 3 WARNINGs, 3 NOTEs