* using log directory ‘/srv/hornik/tmp/CRAN/NADA2.Rcheck’ * using R Under development (unstable) (2024-08-23 r87049) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘NADA2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘NADA2’ version ‘1.1.8’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/6s] NOTE Maintainer: ‘Paul Julian ’ Package has a VignetteBuilder field but no prebuilt vignette index. Found the following (possibly) invalid URLs: URL: https://data.ontario.ca/en/dataset/pollen-monitoring-network-study From: man/Pollen_Thia.Rd Status: Error Message: Could not resolve host: data.ontario.ca * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NADA2’ can be installed ... [7s/7s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘Censored_Data_Analysis.Rmd’ * checking examples ... [11s/11s] ERROR Running examples in ‘NADA2-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: centrend > ### Title: Trend analysis of censored data with a covariate > ### Aliases: centrend > ### Keywords: GAM analysis spline trend > > ### ** Examples > > > data(Brumbaugh) > > Brumbaugh$time=1:nrow(Brumbaugh) > > with(Brumbaugh,centrend(Hg,HgCen,SedTotHg,time.var=time,drawplot=T)) Error in centrend(Hg, HgCen, SedTotHg, time.var = time, drawplot = T) : T used instead of TRUE Calls: with -> with.default -> eval -> eval -> centrend Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... WARNING Directory 'inst/doc' does not exist. Package vignette without corresponding single PDF/HTML: ‘Censored_Data_Analysis.Rmd’ * checking re-building of vignette outputs ... [141s/141s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 1 NOTE