R Under development (unstable) (2024-01-11 r85801 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(NACHO)
> 
> # setwd("tests")
> 
> if (identical(Sys.getenv("NOT_CRAN"), "true")) {
+   rcc_files_directory <- "testthat/plexset_data"
+   plexset_files <- list.files(rcc_files_directory, full.names = TRUE, pattern = "\\.RCC")
+   plexset_tidy <- data.frame(stringsAsFactors = FALSE,
+     name = basename(plexset_files),
+     datapath = plexset_files,
+     IDFILE = basename(plexset_files),
+     plexset_id = rep(paste0("S", seq_len(8)), each = length(plexset_files))
+   )
+   plexset_nacho <- load_rcc(
+     data_directory = rcc_files_directory,
+     ssheet_csv = plexset_tidy,
+     id_colname = "IDFILE"
+   )
+ 
+   rcc_files_directory <- "testthat/salmon_data"
+   salmon_files <- list.files(rcc_files_directory, full.names = TRUE, pattern = "\\.RCC")
+   salmon_tidy <- data.frame(stringsAsFactors = FALSE,
+     name = basename(salmon_files),
+     datapath = salmon_files,
+     IDFILE = basename(salmon_files),
+     plexset_id = rep(paste0("S", seq_len(8)), each = length(salmon_files))
+   )
+   salmon_nacho <- load_rcc(
+     data_directory = rcc_files_directory,
+     ssheet_csv = salmon_tidy,
+     id_colname = "IDFILE"
+   )
+ 
+   rcc_files_directory <- "testthat"
+   plexset_salmon_tidy <- data.frame(stringsAsFactors = FALSE,
+     name = list.files(rcc_files_directory, pattern = "\\.RCC", recursive = TRUE),
+     datapath = list.files(rcc_files_directory, full.names = TRUE, pattern = "\\.RCC", recursive = TRUE),
+     IDFILE = basename(list.files(rcc_files_directory, full.names = TRUE, pattern = "\\.RCC", recursive = TRUE)),
+     plexset_id = rep(paste0("S", seq_len(8)), each = length(list.files(rcc_files_directory, pattern = "\\.RCC", recursive = TRUE)))
+   )
+ 
+   test_check("NACHO")
+ }
> 
> proc.time()
   user  system elapsed 
   1.00    0.15    1.15