* using log directory ‘/srv/hornik/tmp/CRAN_pretest/MultiATSM.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (7)
    Debian flang-new version 19.1.7 (7)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘MultiATSM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MultiATSM’ version ‘1.5.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Rubens Moura <rubens.gtmoura@gmail.com>’

Possibly misspelled words in DESCRIPTION:
  ATSMs (9:123)
  JBES (9:631)
  Rudebusch (9:607)

Found the following (possibly) invalid file URI:
  URI: Guidelines.html
    From: inst/doc/Paper-Replications.html

Found the following (possibly) invalid DOIs:
  DOI: /10.1080/07350015.2012.693855
    From: DESCRIPTION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiATSM’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/18s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [10s/10s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [10m/10m] OK
  Running ‘testthat.R’ [10m/10m]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [29s/29s] OK
* checking PDF version of manual ... [7s/7s] OK
* checking HTML version of manual ... [4s/4s] NOTE
Found the following HTML validation problems:
AdjustOptm_BS.html:62:1 (AdjustOptm_BS.Rd:18): Warning: missing </ul> before </div>
AdjustPathFEVDs.html:62:1 (AdjustPathFEVDs.Rd:18): Warning: missing </ul> before </div>
AdjustPathIRFs.html:62:1 (AdjustPathIRFs.Rd:18): Warning: missing </ul> before </div>
AdjustYieldsDates.html:54:1 (AdjustYieldsDates.Rd:14): Warning: missing </ul> before </div>
Adjust_Const_Type.html:46:1 (Adjust_Const_Type.Rd:10): Warning: missing </ul> before </div>
Aux_BlockDiag.html:58:1 (Aux_BlockDiag.Rd:16): Warning: missing </ul> before </div>
Aux_JLLstruct.html:62:1 (Aux_JLLstruct.Rd:18): Warning: missing </ul> before </div>
Aux_Jordan.html:62:1 (Aux_Jordan.Rd:18): Warning: missing </ul> before </div>
Aux_PSD.html:50:1 (Aux_PSD.Rd:12): Warning: missing </ul> before </div>
BUnspannedAdapJoint.html:66:1 (BUnspannedAdapJoint.Rd:20): Warning: missing </ul> before </div>
BUnspannedAdapSep.html:66:1 (BUnspannedAdapSep.Rd:20): Warning: missing </ul> before </div>
BUnspannedAdapSep_BS.html:70:1 (BUnspannedAdapSep_BS.Rd:22): Warning: missing </ul> before </div>
Boot_DataGraphFact_perShock.html:93:1 (Boot_DataGraphFact_perShock.Rd:39): Warning: missing </ul> before </div>
Boot_DataGraphYield_perShock.html:98:1 (Boot_DataGraphYield_perShock.Rd:42): Warning: missing </ul> before </div>
Boot_Fac_Graphs.html:98:1 (Boot_Fac_Graphs.Rd:42): Warning: missing </ul> before </div>
Boot_Yields_Graphs.html:99:1 (Boot_Yields_Graphs.Rd:43): Warning: missing </ul> before </div>
Boot_graph_template.html:50:1 (Boot_graph_template.Rd:12): Warning: missing </ul> before </div>
BootstrapBoundsSet.html:78:1 (BootstrapBoundsSet.Rd:30): Warning: missing </ul> before </div>
BuildCI_Yields.html:83:1 (BuildCI_Yields.Rd:33): Warning: missing </ul> before </div>
BuildFEVDlist.html:78:1 (BuildFEVDlist.Rd:30): Warning: missing </ul> before </div>
BuildGVAR.html:66:1 (BuildGVAR.Rd:20): Warning: missing </ul> before </div>
BuildIRFlist.html:66:1 (BuildIRFlist.Rd:20): Warning: missing </ul> before </div>
BuildLinkMat.html:54:1 (BuildLinkMat.Rd:14): Warning: missing </ul> before </div>
BuildRiskFactors_BS.html:108:1 (BuildRiskFactors_BS.Rd:48): Warning: missing </ul> before </div>
BuildYields_BS.html:73:1 (BuildYields_BS.Rd:27): Warning: missing </ul> before </div>
CheckInput_K1X.html:54:1 (CheckInput_K1X.Rd:14): Warning: missing </ul> before </div>
CheckInputsForMLE.html:105:1 (CheckInputsForMLE.Rd:47): Warning: missing </ul> before </div>
CheckInputsGVAR.html:50:1 (CheckInputsGVAR.Rd:12): Warning: missing </ul> before </div>
CheckJLLinputs.html:50:1 (CheckJLLinputs.Rd:12): Warning: missing </ul> before </div>
Check_comparison_NoBC.html:98:1 (Check_comparison_NoBC.Rd:42): Warning: missing </ul> before </div>
Check_label_consistency.html:68:1 (Check_label_consistency.Rd:24): Warning: missing </ul> before </div>
ChecksOOS.html:62:1 (ChecksOOS.Rd:18): Warning: missing </ul> before </div>
CleanOrthoJLL_Boot.html:54:1 (CleanOrthoJLL_Boot.Rd:14): Warning: missing </ul> before </div>
ComputeBounds_FEVDandGFEVD.html:83:1 (ComputeBounds_FEVDandGFEVD.Rd:33): Warning: missing </ul> before </div>
ComputeBounds_IRFandGIRF.html:83:1 (ComputeBounds_IRFandGIRF.Rd:33): Warning: missing </ul> before </div>
ComputeGIRFs.html:120:1 (ComputeGIRFs.Rd:56): Warning: missing </ul> before </div>
ComputeIRFs.html:103:1 (ComputeIRFs.Rd:45): Warning: missing </ul> before </div>
Compute_BnX_AnX.html:78:1 (Compute_BnX_AnX.Rd:26): Warning: missing </ul> before </div>
Compute_EP.html:98:1 (Compute_EP.Rd:42): Warning: missing </ul> before </div>
Est_K1h.html:62:1 (Est_K1h.Rd:18): Warning: missing </ul> before </div>
ExpectedComponent.html:74:1 (ExpectedComponent.Rd:28): Warning: missing </ul> before </div>
FEVDandGFEVD_BS.html:62:1 (FEVDandGFEVD_BS.Rd:18): Warning: missing </ul> before </div>
FEVDandGFEVDbs.html:83:1 (FEVDandGFEVDbs.Rd:33): Warning: missing </ul> before </div>
FEVDandGFEVDs_Graphs.html:62:1 (FEVDandGFEVDs_Graphs.Rd:18): Warning: missing </ul> before </div>
FacQuantile_bs.html:88:1 (FacQuantile_bs.Rd:36): Warning: missing </ul> before </div>
FactorBounds_FEVDandGFEVD.html:83:1 (FactorBounds_FEVDandGFEVD.Rd:33): Warning: missing </ul> before </div>
FactorBounds_IRFandGIRF.html:83:1 (FactorBounds_IRFandGIRF.Rd:33): Warning: missing </ul> before </div>
Factors_NonOrtho.html:58:1 (Factors_NonOrtho.Rd:16): Warning: missing </ul> before </div>
FeedMat_M.html:88:1 (FeedMat_M.Rd:36): Warning: missing </ul> before </div>
FeedbackMat_BS.html:88:1 (FeedbackMat_BS.Rd:36): Warning: missing </ul> before </div>
Fit_Subplot.html:83:1 (Fit_Subplot.Rd:33): Warning: missing </ul> before </div>
FolderCreationBoot.html:54:1 (FolderCreationBoot.Rd:14): Warning: missing </ul> before </div>
FolderCreationPoint.html:54:1 (FolderCreationPoint.Rd:14): Warning: missing </ul> before </div>
FolderCreation_Boot.html:73:1 (FolderCreation_Boot.Rd:27): Warning: missing </ul> before </div>
FolderPrep_FEVDs.html:73:1 (FolderPrep_FEVDs.Rd:27): Warning: missing </ul> before </div>
FolderPrep_IRFs.html:73:1 (FolderPrep_IRFs.Rd:27): Warning: missing </ul> before </div>
ForwardPremia.html:74:1 (ForwardPremia.Rd:28): Warning: missing </ul> before </div>
FunctionML_vec.html:88:1 (FunctionML_vec.Rd:36): Warning: missing </ul> before </div>
GVAR_PrepFactors.html:62:1 (GVAR_PrepFactors.Rd:18): Warning: missing </ul> before </div>
Gather_Forecasts.html:58:1 (Gather_Forecasts.Rd:16): Warning: missing </ul> before </div>
Gen_Artificial_Series.html:113:1 (Gen_Artificial_Series.Rd:51): Warning: missing </ul> before </div>
Gen_Forecast_Yields.html:98:1 (Gen_Forecast_Yields.Rd:42): Warning: missing </ul> before </div>
Gen_art_series.html:54:1 (Gen_art_series.Rd:14): Warning: missing </ul> before </div>
GeneralMLEInputs.html:86:1 (GeneralMLEInputs.Rd:36): Warning: missing </ul> before </div>
GetAuxPara.html:92:1 (GetAuxPara.Rd:33): Warning: missing </ul> before </div>
GetLabels_JLL.html:54:1 (GetLabels_JLL.Rd:14): Warning: missing </ul> before </div>
GetLabels_sepQ.html:54:1 (GetLabels_sepQ.Rd:14): Warning: missing </ul> before </div>
GetPdynPara.html:88:1 (GetPdynPara.Rd:36): Warning: missing </ul> before </div>
GetPdynPara_BC.html:83:1 (GetPdynPara_BC.Rd:33): Warning: missing </ul> before </div>
GetPdynPara_NoBC.html:74:1 (GetPdynPara_NoBC.Rd:28): Warning: missing </ul> before </div>
GetTruePara.html:97:1 (GetTruePara.Rd:36): Warning: missing </ul> before </div>
GetYields_AllCountries.html:54:1 (GetYields_AllCountries.Rd:14): Warning: missing </ul> before </div>
Get_As.html:66:1 (Get_As.Rd:20): Warning: missing </ul> before </div>
Get_BFull.html:62:1 (Get_BFull.Rd:18): Warning: missing </ul> before </div>
Get_Bs.html:74:1 (Get_Bs.Rd:24): Warning: missing </ul> before </div>
Get_FeedMat_NoBC.html:74:1 (Get_FeedMat_NoBC.Rd:28): Warning: missing </ul> before </div>
Get_G0G1Sigma.html:62:1 (Get_G0G1Sigma.Rd:18): Warning: missing </ul> before </div>
Get_Gy1.html:58:1 (Get_Gy1.Rd:16): Warning: missing </ul> before </div>
Get_SSZ_BC.html:66:1 (Get_SSZ_BC.Rd:20): Warning: missing </ul> before </div>
Get_SigmaYields.html:66:1 (Get_SigmaYields.Rd:20): Warning: missing </ul> before </div>
Get_Sigma_JLL.html:62:1 (Get_Sigma_JLL.Rd:18): Warning: missing </ul> before </div>
Get_Unspanned.html:58:1 (Get_Unspanned.Rd:16): Warning: missing </ul> before </div>
Get_a0.html:50:1 (Get_a0.Rd:12): Warning: missing </ul> before </div>
Get_llk.html:94:1 (Get_llk.Rd:34): Warning: missing </ul> before </div>
Get_r0.html:82:1 (Get_r0.Rd:28): Warning: missing </ul> before </div>
Getdt.html:47:1 (Getdt.Rd:11): Warning: missing </ul> before </div>
GraphicalOutputs.html:83:1 (GraphicalOutputs.Rd:33): Warning: missing </ul> before </div>
IRFandGIRF_BS.html:62:1 (IRFandGIRF_BS.Rd:18): Warning: missing </ul> before </div>
IRFandGIRFbs.html:83:1 (IRFandGIRFbs.Rd:33): Warning: missing </ul> before </div>
IRFandGIRFs_Format_Fac.html:46:1 (IRFandGIRFs_Format_Fac.Rd:10): Warning: missing </ul> before </div>
IRFandGIRFs_Format_Yields.html:46:1 (IRFandGIRFs_Format_Yields.Rd:10): Warning: missing </ul> before </div>
IdxAllSpanned.html:54:1 (IdxAllSpanned.Rd:14): Warning: missing </ul> before </div>
IdxSpanned.html:58:1 (IdxSpanned.Rd:16): Warning: missing </ul> before </div>
Idx_UnspanFact.html:54:1 (Idx_UnspanFact.Rd:14): Warning: missing </ul> before </div>
ImposeStat_Aux.html:54:1 (ImposeStat_Aux.Rd:14): Warning: missing </ul> before </div>
ImposeStat_True.html:58:1 (ImposeStat_True.Rd:16): Warning: missing </ul> before </div>
Intra_Yields.html:54:1 (Intra_Yields.Rd:14): Warning: missing </ul> before </div>
InvMat_Robust.html:46:1 (InvMat_Robust.Rd:10): Warning: missing </ul> before </div>
Jordan_JLL.html:54:1 (Jordan_JLL.Rd:14): Warning: missing </ul> before </div>
K1XQStationary.html:47:1 (K1XQStationary.Rd:11): Warning: missing </ul> before </div>
LabelsSpanned.html:46:1 (LabelsSpanned.Rd:10): Warning: missing </ul> before </div>
LabelsStar.html:46:1 (LabelsStar.Rd:10): Warning: missing </ul> before </div>
ML_stable.html:50:1 (ML_stable.Rd:12): Warning: missing </ul> before </div>
MLtemporary.html:54:1 (MLtemporary.Rd:14): Warning: missing </ul> before </div>
MarginalModelPara.html:46:1 (MarginalModelPara.Rd:10): Warning: missing </ul> before </div>
MatAdjusted.html:50:1 (MatAdjusted.Rd:12): Warning: missing </ul> before </div>
MergeFEVD_graphs.html:50:1 (MergeFEVD_graphs.Rd:12): Warning: missing </ul> before </div>
NoOrthoVAR_JLL.html:50:1 (NoOrthoVAR_JLL.Rd:12): Warning: missing </ul> before </div>
NumOutputs_Bootstrap.html:68:1 (NumOutputs_Bootstrap.Rd:24): Warning: missing </ul> before </div>
OOS_Forecast.html:78:1 (OOS_Forecast.Rd:30): Warning: missing </ul> before </div>
OptOutputs.html:153:1 (OptOutputs.Rd:75): Warning: missing </ul> before </div>
OptimizationSetup_ATSM.html:62:1 (OptimizationSetup_ATSM.Rd:18): Warning: missing </ul> before </div>
Optimization_PE.html:124:1 (Optimization_PE.Rd:54): Warning: missing </ul> before </div>
Optimization_Time.html:50:1 (Optimization_Time.Rd:12): Warning: missing </ul> before </div>
OrthoReg_JLL.html:62:1 (OrthoReg_JLL.Rd:18): Warning: missing </ul> before </div>
OrthoVAR_JLL.html:62:1 (OrthoVAR_JLL.Rd:18): Warning: missing </ul> before </div>
OutputConstruction.html:76:1 (OutputConstruction.Rd:29): Warning: missing </ul> before </div>
Outputs2exportMLE.html:89:1 (Outputs2exportMLE.Rd:37): Warning: missing </ul> before </div>
ParaLabelsOpt.html:59:1 (ParaLabelsOpt.Rd:17): Warning: missing </ul> before </div>
PdynResid_BS.html:54:1 (PdynResid_BS.Rd:14): Warning: missing </ul> before </div>
RMSE.html:46:1 (RMSE.Rd:10): Warning: missing </ul> before </div>
ResampleResiduals_BS.html:68:1 (ResampleResiduals_BS.Rd:24): Warning: missing </ul> before </div>
RootEigen.html:54:1 (RootEigen.Rd:14): Warning: missing </ul> before </div>
Rotate_Lat_Obs.html:54:1 (Rotate_Lat_Obs.Rd:14): Warning: missing </ul> before </div>
SA_algorithm.html:88:1 (SA_algorithm.Rd:36): Warning: missing </ul> before </div>
SpecificMLEInputs.html:140:1 (SpecificMLEInputs.Rd:57): Warning: missing </ul> before </div>
TermPremia.html:58:1 (TermPremia.Rd:16): Warning: missing </ul> before </div>
TermPremiaDecomp.html:69:1 (TermPremiaDecomp.Rd:25): Warning: missing </ul> before </div>
TimeVarWeights_GVAR.html:73:1 (TimeVarWeights_GVAR.Rd:27): Warning: missing </ul> before </div>
True_BlockDiag.html:62:1 (True_BlockDiag.Rd:18): Warning: missing </ul> before </div>
True_JLLstruct.html:62:1 (True_JLLstruct.Rd:18): Warning: missing </ul> before </div>
True_Jordan.html:58:1 (True_Jordan.Rd:16): Warning: missing </ul> before </div>
True_PSD.html:50:1 (True_PSD.Rd:12): Warning: missing </ul> before </div>
Update_ParaList.html:78:1 (Update_ParaList.Rd:30): Warning: missing </ul> before </div>
Update_SSZ_JLL.html:58:1 (Update_SSZ_JLL.Rd:16): Warning: missing </ul> before </div>
VARX.html:66:1 (VARX.Rd:20): Warning: missing </ul> before </div>
VarianceExplained.html:58:1 (VarianceExplained.Rd:16): Warning: missing </ul> before </div>
WishGraphs_FEVDandGFEVD_Boot.html:50:1 (WishGraphs_FEVDandGFEVD_Boot.Rd:12): Warning: missing </ul> before </div>
WishGraphs_IRFandGIRF_Boot.html:50:1 (WishGraphs_IRFandGIRF_Boot.Rd:12): Warning: missing </ul> before </div>
Wished_Graphs_FEVDandGFEVD.html:54:1 (Wished_Graphs_FEVDandGFEVD.Rd:14): Warning: missing </ul> before </div>
Wished_Graphs_IRFandGIRF.html:54:1 (Wished_Graphs_IRFandGIRF.Rd:14): Warning: missing </ul> before </div>
Y_Fit.html:66:1 (Y_Fit.Rd:20): Warning: missing </ul> before </div>
Y_ModImp.html:74:1 (Y_ModImp.Rd:24): Warning: missing </ul> before </div>
YieldBounds_FEVDandGFEVD.html:88:1 (YieldBounds_FEVDandGFEVD.Rd:36): Warning: missing </ul> before </div>
YieldBounds_IRFandGIRF.html:88:1 (YieldBounds_IRFandGIRF.Rd:36): Warning: missing </ul> before </div>
YieldFor.html:73:1 (YieldFor.Rd:27): Warning: missing </ul> before </div>
YieldQuantile_bs.html:93:1 (YieldQuantile_bs.Rd:39): Warning: missing </ul> before </div>
YieldsFitAll.html:66:1 (YieldsFitAll.Rd:20): Warning: missing </ul> before </div>
autoplot.ATSMModelBoot.html:61:1 (autoplot.ATSMModelBoot.Rd:18): Warning: missing </ul> before </div>
autoplot.ATSMNumOutputs.html:58:1 (autoplot.ATSMNumOutputs.Rd:17): Warning: missing </ul> before </div>
autoplot.html:50:1 (autoplot.Rd:12): Warning: missing </ul> before </div>
check_numeric.html:50:1 (check_numeric.Rd:12): Warning: missing </ul> before </div>
plot.ATSMModelForecast.html:51:1 (plot.ATSMModelForecast.Rd:12): Warning: missing </ul> before </div>
pos_map.html:46:1 (pos_map.Rd:10): Warning: missing </ul> before </div>
print.ATSMModelInputs.html:51:1 (print.ATSMModelInputs.Rd:12): Warning: missing </ul> before </div>
residY_original.html:58:1 (residY_original.Rd:16): Warning: missing </ul> before </div>
rhoParas.html:58:1 (rhoParas.Rd:16): Warning: missing </ul> before </div>
richardson_diff.html:66:1 (richardson_diff.Rd:20): Warning: missing </ul> before </div>
safe_solve.html:62:1 (safe_solve.Rd:18): Warning: missing </ul> before </div>
scaling_from_jacobian.html:46:1 (scaling_from_jacobian.Rd:10): Warning: missing </ul> before </div>
shrink_FeedMat_BC.html:54:1 (shrink_FeedMat_BC.Rd:14): Warning: missing </ul> before </div>
summary.ATSMModelInputs.html:51:1 (summary.ATSMModelInputs.Rd:12): Warning: missing </ul> before </div>
summary.ATSMModelOutputs.html:51:1 (summary.ATSMModelOutputs.Rd:12): Warning: missing </ul> before </div>
withDefault.html:50:1 (withDefault.Rd:12): Warning: missing </ul> before </div>
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs