* using log directory 'd:/RCompile/CRANincoming/R-devel/MultBiplotR.Rcheck' * using R Under development (unstable) (2023-11-13 r85520 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'MultBiplotR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MultBiplotR' version '23.11.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jose Luis Vicente-Villardon ' New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Biplot (8:346) Biplots (3:36, 8:334, 8:364, 8:380, 8:480, 8:554) HJ (8:343) MANOVA (8:373) STATIS (8:459) biplot (8:53) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-10-29 as requires archived package 'optimr'. The Date field is not in ISO 8601 yyyy-mm-dd format. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MultBiplotR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: predict: function(object, ...) predict.OrdinalLogisticRegression: function(model, newdata) See section 'Registering S3 methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [58s] OK * checking Rd files ... NOTE checkRd: (-1) PCA.Bootstrap.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) PCA.Bootstrap.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) PCA.Bootstrap.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) PCA.Bootstrap.Rd:37: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... NOTE Argument items with no description in Rd file 'BinaryLogBiplotJoint.Rd': 'lambda' Argument items with no description in Rd file 'ConstrainedOrdinalLogisticBiplot.Rd': 'show' Argument items with no description in Rd file 'ContinuousProximities.Rd': 'ysup' Argument items with no description in Rd file 'Multiquad.Rd': 'nnodes' 'dims' Argument items with no description in Rd file 'PLSR1Bin.Rd': 'grouping' Argument items with no description in Rd file 'Unfolding.Rd': 'lambda' 'omega' 'plot' Argument items with no description in Rd file 'plot.CCA.sol.Rd': 'x' 'A1' 'A2' 'ShowAxis' 'margin' 'PlotSites' 'PlotSpecies' 'PlotEnv' 'LabelSites' 'LabelSpecies' 'LabelEnv' 'TypeSites' 'SpeciesQuality' 'MinQualityVars' 'dp' 'pr' 'PlotAxis' 'TypeScale' 'ValuesScale' 'mode' 'CexSites' 'CexSpecies' 'CexVar' 'ColorSites' 'ColorSpecies' 'ColorVar' 'PchSites' 'PchSpecies' 'PchVar' 'SizeQualSites' 'SizeQualSpecies' 'SizeQualVars' 'ColorQualSites' 'ColorQualSpecies' 'ColorQualVars' 'SmartLabels' Argument items with no description in Rd file 'plot.CanonicalDistanceAnalysis.Rd': 'SmartLabels' Argument items with no description in Rd file 'plot.ContinuousBiplot.Rd': 'PlotTrajVars' 'PlotTrajInds' 'LabelTraj' 'Limits' 'PlotSupInds' 'WhatSupInds' 'ColorSupInd' 'CexSupInd' 'PchSupInd' 'LabelSupInd' 'PredSupPoints' Argument items with no description in Rd file 'plot.Principal.Coordinates.Rd': 'ShowAxis' 'PlotBinaryMeans' 'MinIncidence' 'ShowBox' 'ColorSupContVars' 'ColorSupBinVars' 'ColorSupOrdVars' 'TypeScale' 'SupMode' 'PlotSupVars' Argument items with no description in Rd file 'plot.Unfolding.Rd': 'SpeciesQuality' 'dp' 'PlotAxis' 'TypeScale' 'ValuesScale' 'mode' 'CexSites' 'CexSpecies' 'CexVar' 'ColorSites' 'ColorSpecies' 'ColorVar' 'PchSites' 'PchSpecies' 'PchVar' 'SizeQualSites' 'SizeQualSpecies' 'SizeQualVars' 'ColorQualSites' 'ColorQualSpecies' 'ColorQualVars' 'SmartLabels' 'PlotTol' '...' Argument items with no description in Rd file 'scores.CCA.sol.Rd': 'CCA.sol' Argument items with no description in Rd file 'summary.Canonical.Biplot.Rd': 'object' Argument items with no description in Rd file 'summary.TetraDualStatis.Rd': 'object' '\dots' Argument items with no description in Rd file 't3pcovr.Rd': 'I' 'J' 'K' 'L' 'r1' 'r2' 'r3' 'conv' 'OriginalAlfa' 'AlternativeLossF' 'nRuns' 'StartSeed' * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [45s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [31s] OK * DONE Status: 4 NOTEs