R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"
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> library(testthat)
> library(MiscMetabar)
Loading required package: phyloseq
Loading required package: ggplot2
Loading required package: dada2
Loading required package: Rcpp
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: purrr

Attaching package: 'purrr'

The following object is masked from 'package:testthat':

    is_null

> 
> test_check("MiscMetabar")
Starting 2 test processes
[ FAIL 0 | WARN 1 | SKIP 78 | PASS 84 ]

══ Skipped tests (78) ══════════════════════════════════════════════════════════
• On CRAN (65): 'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',
  'test_controls.R:7:3', 'test_controls.R:14:3', 'test_controls.R:46:3',
  'test_deprecated.R:26:3', 'test_adonis.R:6:3', 'test_deseq2_edgeR.R:33:5',
  'test_deseq2_edgeR.R:42:3', 'test_deseq2_edgeR.R:65:5',
  'test_deseq2_edgeR.R:76:3', 'test_figures_alpha_div.R:19:3',
  'test_figures_alpha_div.R:63:3', 'test_figures_alpha_div.R:73:3',
  'test_figures_alpha_div.R:95:3', 'test_figures_alpha_div.R:122:3',
  'test_figures_alpha_div.R:151:3', 'test_figures_alpha_div.R:157:3',
  'test_figures_biplot.R:14:3', 'test_figures_biplot.R:52:3',
  'test_figures_misc.R:26:3', 'test_figures_misc.R:35:3',
  'test_figures_summary_plot.R:10:3', 'test_figures_summary_plot.R:20:3',
  'test_figures_summary_plot.R:30:3', 'test_figures_taxo.R:30:3',
  'test_figures_taxo.R:45:3', 'test_figures_taxo.R:64:3',
  'test_figures_taxo.R:165:3', 'test_figures_taxo.R:209:5',
  'test_figures_taxo.R:252:5', 'test_figures_taxo.R:319:5',
  'test_figures_taxo.R:354:3', 'test_figures_taxo.R:379:3',
  'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',
  'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',
  'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:241:5',
  'test_figures_beta_div.R:259:5', 'test_figures_beta_div.R:289:5',
  'test_figures_beta_div.R:314:3', 'test_figures_beta_div.R:346:3',
  'test_figures_beta_div.R:355:3', 'test_figures_beta_div.R:387:3',
  'test_krona.R:7:3', 'test_phyloseq_class.R:10:3',
  'test_phyloseq_class.R:51:3', 'test_rw.R:8:3', 'test_rw.R:24:3',
  'test_subset.R:7:3', 'test_subset.R:18:3', 'test_table_functions.R:34:5',
  'test_table_functions.R:47:5', 'test_misc.R:11:3', 'test_misc.R:30:3',
  'test_misc.R:97:3', 'test_tuckey.R:5:3', 'test_tuckey.R:17:3',
  'test_tuckey.R:26:3', 'test_targets.R:5:3', 'test_targets.R:56:3',
  'test_targets.R:101:3', 'test_targets.R:111:3'
• On Windows (13): 'test_figures_misc.R:10:3', 'test_figures_misc.R:18:3',
  'test_figures_taxo.R:14:3', 'test_figures_taxo.R:413:3',
  'test_figures_beta_div.R:208:3', 'test_figures_beta_div.R:401:3',
  'test_figures_beta_div.R:413:3', 'test_phyloseq_class.R:92:3',
  'test_rw.R:38:3', 'test_table_functions.R:5:3',
  'test_table_functions.R:18:3', 'test_targets.R:83:3', 'test_targets.R:128:3'

[ FAIL 0 | WARN 1 | SKIP 78 | PASS 84 ]
> 
> # expect_equal() is equal within small numerical tolerance?
> # expect_identical() is exactly equal?
> # expect_match() matches specified string or regular
> # expect_output() prints specified output?
> # expect_message() displays specified message?
> # expect_warning() displays specified warning?
> # expect_error() throws specified error?
> # expect_is() output inherits from certain class?
> # expect_false() returns FALSE?
> # expect_true() returns TRUE?
> 
> ##   expect_error(1 / "a", "non-numeric argument")
> ##   expect_warning(log(-1), "NaNs produced")
> 
> proc.time()
   user  system elapsed 
  16.14    1.60   61.79