* using log directory 'd:/RCompile/CRANincoming/R-devel/MiscMetabar.Rcheck'
* using R Under development (unstable) (2024-02-07 r85873 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MiscMetabar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MiscMetabar' version '0.7.3'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Adrien Taudière <adrien.taudiere@zaclys.net>'

New submission

Possibly misspelled words in DESCRIPTION:
  Metabarcoding (3:36)
  MiscMetabar (7:18, 7:205, 7:284)
  bioinformatic (7:255)
  dada (7:187)
  metabarcoding (7:126)
  phyloseq (7:177)
  powerfull (7:360)
  reproducibility (7:107)

Found the following (possibly) invalid URLs:
  URL: 
    From: inst/doc/MiscMetabar.html
    Message: Empty URL

Found the following (possibly) invalid file URI:
  URI: code_of_conduct.md
    From: README.md

Found the following (possibly) invalid DOIs:
  DOI: 10.7717/2Fpeerj.593
    From: man/swarm_clustering.Rd
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MiscMetabar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [13s] OK
* checking whether the package can be loaded with stated dependencies ... [12s] OK
* checking whether the package can be unloaded cleanly ... [12s] OK
* checking whether the namespace can be loaded with stated dependencies ... [13s] OK
* checking whether the namespace can be unloaded cleanly ... [14s] OK
* checking loading without being on the library search path ... [13s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [68s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [254s] ERROR
Running examples in 'MiscMetabar-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_edgeR_pq
> ### Title: Plot edgeR results for a phyloseq or a edgeR object.
> ### Aliases: plot_edgeR_pq
> 
> ### ** Examples
> 
> data("GlobalPatterns", package = "phyloseq")
> plot_edgeR_pq(GlobalPatterns, c("SampleType", "Soil", "Feces"),
+   color_tax = "Kingdom"
+ )
Conversion to edgeR format
Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
Also defined by 'RNeXML' 'tidytree'
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.4/statmod/libs/x64/statmod.dll':
  `maximal number of DLLs reached...
Calls: plot_edgeR_pq ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> 
> 
> 
> base::assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
> base::cat("plot_deseq2_pq", base::get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=base::get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
> cleanEx()
> nameEx("plot_edgeR_pq")
> ### * plot_edgeR_pq
> 
> flush(stderr()); flush(stdout())
> 
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_edgeR_pq
> ### Title: Plot edgeR results for a phyloseq or a edgeR object.
> ### Aliases: plot_edgeR_pq
> 
> ### ** Examples
> 
> data("GlobalPatterns", package = "phyloseq")
> plot_edgeR_pq(GlobalPatterns, c("SampleType", "Soil", "Feces"),
+   color_tax = "Kingdom"
+ )
Conversion to edgeR format
Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
Also defined by 'RNeXML' 'tidytree'
Error in inDL(x, as.logical(local), as.logical(now), ...) : 
  unable to load shared object 'D:/RCompile/CRANpkg/lib/4.4/statmod/libs/x64/statmod.dll':
  `maximal number of DLLs reached...
Calls: plot_edgeR_pq ... asNamespace -> loadNamespace -> library.dynam -> dyn.load -> inDL
Execution halted
======== End of example output (where/before crash/hang up occured ?) ========