* using log directory ‘/srv/hornik/tmp/CRAN/MetChem.Rcheck’ * using R Under development (unstable) (2023-07-04 r84639) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (1) GNU Fortran (Debian 12.2.0-14) 12.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MetChem/DESCRIPTION’ ... OK * this is package ‘MetChem’ version ‘0.4’ * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Stefano Cacciatore ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Abdel (13:509) Acad (13:461) Bioinformatics (13:356, 13:600) Cacciatore (13:287, 13:408, 13:579) KODAMA (13:202) LF (13:565) Luchinat (13:311, 13:422) MacIntyre (13:335, 13:534) Melak (13:525) Proc (13:451) Shafy (13:515) Tenori (13:301, 13:434) Zadra (13:548) Zerbini (13:557) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-06-20 as requires archived package 'rcdk'. The Description field contains Advances . Please write DOIs as . Size of tarball: 6426278 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MetChem’ can be installed ... [6s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/1s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/8s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [6s/6s] OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress HFD.RData 13Kb 11Kb xz Metabolites.RData 5.7Mb 1.2Mb xz * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [13s/12s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [0s/0s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 1 NOTE