R Under development (unstable) (2024-04-27 r86487 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("Mercator") Loading required package: Thresher Loading required package: ClassDiscovery Loading required package: cluster Loading required package: oompaBase Loading required package: PCDimension > data("CML500") > > ### need a plain old binary matrix > working <- t(CML500@binmat) > feat <- CML500@columnInfo > sams <- CML500@rowInfo > dim(working) [1] 511 770 > dim(feat) [1] 511 3 > dim(sams) [1] 770 6 > > plain <- BinaryMatrix(working) # default row and column info > colonly <- BinaryMatrix(working, sams) > > # construction, using both info parts > egg <- BinaryMatrix(working, sams, feat) > summary(egg) An object of the 'BinaryMatrix' class, of size [1] 511 770 History: [1] "Newly created." > > # remove extra identical feature vectors > egg <- removeDuplicateFeatures(egg) > summary(egg) An object of the 'BinaryMatrix' class, of size [1] 511 446 History: [1] "Newly created." "Duplicates removed." > all( dim(egg) == c(511, 446) ) [1] TRUE > > # transposing back using the t-operator. > gge <- t(egg) > summary(gge) An object of the 'BinaryMatrix' class, of size [1] 446 511 History: [1] "Newly created." "Duplicates removed." "transposed" > > proc.time() user system elapsed 2.70 0.35 3.04