test_that("test measurement timing", { skip_on_cran() cdm <- testMockCdm() cdm <- copyCdm(cdm) result <- summariseMeasurementUse( cdm = cdm, codes = list("test_codelist" = c(3001467L, 45875977L))) boxplot1 <- result |> plotMeasurementSummary(y = "time", facet = "cdm_name", colour = NULL) expect_true(all(c("gg", "ggplot") %in% class(boxplot1))) boxplot2 <- result |> plotMeasurementSummary(y = "time", facet = "cdm_name", colour = NULL, timeScale = "years") expect_true(all(c("gg", "ggplot") %in% class(boxplot2))) boxplot3 <- result |> plotMeasurementSummary(y = "measurements_per_subject", facet = "cdm_name", colour = "cdm_name") expect_true(all(c("gg", "ggplot") %in% class(boxplot3))) density1 <- result |> plotMeasurementSummary(y = "measurements_per_subject", facet = "cdm_name", plotType = "densityplot") expect_true(all(c("gg", "ggplot") %in% class(density1))) density2 <- result |> plotMeasurementSummary(y = "time", facet = "cdm_name", plotType = "densityplot") expect_true(all(c("gg", "ggplot") %in% class(density2))) density3 <- result |> plotMeasurementSummary(y = "time", facet = "cdm_name", plotType = "densityplot", timeScale = "years") expect_true(all(c("gg", "ggplot") %in% class(density3))) # Histogram result <- summariseMeasurementUse( cdm = cdm, codes = list("test_codelist" = c(3001467L, 45875977L)), histogram = list( "time" = list('0 to 100' = c(0, 100), '110 to 200' = c(110, 200), '210 to 300' = c(210, 300), '310 to Inf' = c(310, Inf)), "measurements_per_subject" = list('0 to 10' = c(0, 10), '11 to 20' = c(11, 20), '21 to 30' = c(21, 30), '31 to Inf' = c(31, Inf)), "value_as_number" = list('0 to 5' = c(0, 5), '6 to 10' = c(6, 10), '11 to 15' = c(11, 15), '>15' = c(16, Inf)) ) ) plotMeasurementSummary(result, plotType = "barplot") plotMeasurementSummary(result, y = "measurements_per_subject", plotType = "barplot") expect_error(plotMeasurementSummary(result, y = "h")) expect_error(plotMeasurementSummary(result, facet = "h")) expect_error(plotMeasurementSummary(result, colour = "h")) expect_error(plotMeasurementSummary(result, timeScale = "h")) expect_error(plotMeasurementSummary(result, plotType = "h")) dropCreatedTables(cdm = cdm) })