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Type 'q()' to quit R. > #### Testing consistency of "abIndex" == "abstract-indexing vectors" class : > > ## for R_DEFAULT_PACKAGES=NULL : > library(stats) > library(utils) > > library(Matrix) > > source(system.file("test-tools.R", package = "Matrix"))# identical3() etc Loading required package: tools > > validObject(ab <- new("abIndex")) [1] TRUE > str(ab) Formal class 'abIndex' [package "Matrix"] with 3 slots ..@ kind: chr "int32" ..@ x : int(0) ..@ rleD:Formal class 'rleDiff' [package "Matrix"] with 2 slots .. .. ..@ first: int(0) .. .. ..@ rle :List of 2 .. .. .. ..$ lengths: int(0) .. .. .. ..$ values : int(0) .. .. .. ..- attr(*, "class")= chr "rle" > > set.seed(1) > ex. <- list(2:1000, 0:10, sample(100), c(-3:40, 20:70), + c(1:100,77L, 50:40, 10L), c(17L, 3L*(12:3))) > ## we know which kinds will come out: "compressed" for all but random: > rD <- "rleDiff"; kinds <- c(rD,rD,"int32", rD, rD, rD) > isCmpr <- kinds == rD > ab. <- lapply(ex., as, Class = "abIndex") > nu. <- lapply(ab., as, Class = "numeric") > in. <- lapply(ab., as, Class = "integer") > rles <- lapply(ab.[isCmpr], function(u) u@rleD@rle) > r.x <- lapply(ex.[isCmpr], function(.) rle(diff(.))) > > stopifnot(sapply(ab., validObject), + identical(ex., nu.), + identical(ex., in.), + ## Check that the relevant cases really *are* "compressed": + sapply(ab., slot, "kind") == kinds, + ## Using rle(diff(.)) is equivalent to using our C code: + identical(rles, r.x), + ## Checking Group Methods - "Summary" : + sapply(ab., range) == sapply(ex., range), + sapply(ab., any) == sapply(ex., any), + TRUE) > > ## testing c() method, i.e. currently c.abIndex(): > tst.c.abI <- function(lii) { + stopifnot(is.list(lii), + all(unlist(lapply(lii, mode)) == "numeric")) + aii <- lapply(lii, as, "abIndex") + v.i <- do.call(c, lii) + a.i <- do.call(c, aii) + avi <- as(v.i, "abIndex") + ## identical() is too hard, as values & lengths can be double/integer + stopifnot(all.equal(a.i, avi, tolerance = 0)) + } > tst.c.abI(list(2:6, 70:50, 5:-2)) > ## now an example where *all* are uncompressed: > tst.c.abI(list(c(5, 3, 2, 4, 7, 1, 6), 3:4, 1:-1)) > ## and one with parts that are already non-trivial: > exc <- ex.[isCmpr] > tst.c.abI(exc) > set.seed(101) > N <- length(exc) # 5 > for(i in 1:10) { + tst.c.abI(exc[sample(N, replace=TRUE)]) + tst.c.abI(exc[sample(N, N-1)]) + tst.c.abI(exc[sample(N, N-2)]) + } > > for(n in 1:120) { + cat(".") + k <- 1 + 4*rpois(1, 5) # >= 1 + ## "random" rle -- NB: consecutive values *must* differ (for uniqueness) + v <- as.integer(1+ 10*rnorm(k)) + while(any(dv <- duplicated(v))) + v[dv] <- v[dv] + 1L + rl <- structure(list(lengths = as.integer(1 + rpois(k, 10)), values = v), + class = "rle") + ai <- new("abIndex", kind = "rleDiff", + rleD = new("rleDiff", first = rpois(1, 20), rle = rl)) + validObject(ai) + ii <- as(ai, "numeric") + iN <- ii; iN[180] <- NA; aiN <- as(iN,"abIndex") + iN <- as(aiN, "numeric") ## NA from 180 on + stopifnot(is.numeric(ii), ii == round(ii), + identical(ai, as(ii, "abIndex")), + identical(is.na(ai), is.na(ii)), + identical(is.na(aiN), is.na(iN)), + identical(is.finite (aiN), is.finite(iN)), + identical(is.infinite(aiN), is.infinite(iN)) + ) + if(n %% 40 == 0) cat(n,"\n") + } ........................................40 ........................................80 ........................................120 > > ## we have : identical(lapply(ex., as, "abIndex"), ab.) > > mkStr <- function(ch, n) paste(rep.int(ch, n), collapse="") > > ##O for(grMeth in getGroupMembers("Ops")) { > ##O cat(sprintf("\n%s :\n%s\n", grMeth, mkStr("=", nchar(grMeth)))) > grMeth <- "Arith" > for(ng in getGroupMembers(grMeth)) { + cat(ng, ": ") + G <- get(ng) + t.tol <- if(ng == "/") 1e-12 else 0 + ## "/" with no long double (e.g. on Sparc Solaris): 1.125e-14 + AEq <- function(a,b, ...) assert.EQ(a, b, tol=t.tol, giveRE=TRUE) + for(v in ex.) { + va <- as(v, "abIndex") + for(s in list(-1, 17L, TRUE, FALSE)) # numeric *and* logical + if(!((identical(s, FALSE) && ng == "/"))) { ## division by 0 may "fail" + + AEq(as(G(v, s), "abIndex"), G(va, s)) + AEq(as(G(s, v), "abIndex"), G(s, va)) + } + cat(".") + } + cat(" [Ok]\n") + } + : ...... [Ok] - : ...... [Ok] * : ...... [Ok] ^ : ...... [Ok] %% : ...... [Ok] %/% : ...... [Ok] / : Mean relative difference: 1.471486e-16 .Mean relative difference: 1.572816e-16 ..Mean relative difference: 1.459133e-16 .Mean relative difference: 1.498473e-16 .Mean relative difference: 1.67767e-16 . [Ok] > ##O } > > ## check the abIndex versions of indDiag() and indTri() : > for(n in 1:7) { + stopifnotValid(ii <- Matrix:::abIindDiag(n), "abIndex") + stopifnot(ii@kind == "rleDiff", + Matrix:::indDiag(n) == as(ii, "numeric")) + } > > for(n in 0:7) + for(diag in c(TRUE,FALSE)) + for(upper in c(TRUE,FALSE)) { + stopifnotValid(ii <- Matrix:::abIindTri(n, diag=diag,upper=upper), "abIndex") + if(n) + stopifnot(Matrix:::indTri(n, diag=diag,upper=upper) == as(ii, "numeric"), + allow.logical0=TRUE) # works also in R versions w/o it as formal argument + } > cat('Time elapsed: ', (.pt <- proc.time()),'\n') # "stats" Time elapsed: 1.57 0.1 1.67 NA NA > > proc.time() user system elapsed 1.57 0.10 1.67