* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ManyIVsNets.Rcheck’ * using R Under development (unstable) (2025-06-11 r88304) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3) Debian flang-new version 19.1.7 (3) * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘ManyIVsNets/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ManyIVsNets’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Avishek Bhandari ’ New submission Possibly misspelled words in DESCRIPTION: EPC (10:70) Schreiber (17:5) Yogo (18:13) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ManyIVsNets’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [2s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ManyIVsNets) > > test_check("ManyIVsNets") Creating real multidimensional instruments from EPC data patterns... v Real instruments created for 5 countries Creating real multidimensional instruments from EPC data patterns... v Real instruments created for 5 countries Merging EPC data with created instruments... v Data merged successfully Enhanced dataset: 155 observations, 5 countries Creating real multidimensional instruments from EPC data patterns... v Real instruments created for 5 countries Creating composite instruments using factor analysis and scaling... v Composite instruments created using factor analysis approach Merging EPC data with created instruments... v Data merged successfully Enhanced dataset: 50 observations, 5 countries Creating composite instruments using factor analysis and scaling... v Composite instruments created using factor analysis approach Calculating instrument strength (F-statistics)... v Instrument strength analysis completed Conducting Transfer Entropy analysis... Variables for TE analysis: lnCO2, lnUR, lnURF, lnURM, lnPCGDP, lnTrade, lnRES Complete cases for TE analysis: 45 Calculating Transfer Entropy matrix... Computing TE: lnUR -> lnCO2 Computing TE: lnURF -> lnCO2 Computing TE: lnURM -> lnCO2 Computing TE: lnPCGDP -> lnCO2 Computing TE: lnTrade -> lnCO2 Computing TE: lnRES -> lnCO2 Completed variable 1 of 7 Computing TE: lnCO2 -> lnUR Computing TE: lnURF -> lnUR Computing TE: lnURM -> lnUR Computing TE: lnPCGDP -> lnUR Computing TE: lnTrade -> lnUR Computing TE: lnRES -> lnUR Completed variable 2 of 7 Computing TE: lnCO2 -> lnURF Computing TE: lnUR -> lnURF Computing TE: lnURM -> lnURF Computing TE: lnPCGDP -> lnURF Computing TE: lnTrade -> lnURF Computing TE: lnRES -> lnURF Completed variable 3 of 7 Computing TE: lnCO2 -> lnURM Computing TE: lnUR -> lnURM Computing TE: lnURF -> lnURM Computing TE: lnPCGDP -> lnURM Computing TE: lnTrade -> lnURM Computing TE: lnRES -> lnURM Completed variable 4 of 7 Computing TE: lnCO2 -> lnPCGDP Computing TE: lnUR -> lnPCGDP Computing TE: lnURF -> lnPCGDP Computing TE: lnURM -> lnPCGDP Computing TE: lnTrade -> lnPCGDP Computing TE: lnRES -> lnPCGDP Completed variable 5 of 7 Computing TE: lnCO2 -> lnTrade Computing TE: lnUR -> lnTrade Computing TE: lnURF -> lnTrade Computing TE: lnURM -> lnTrade Computing TE: lnPCGDP -> lnTrade Computing TE: lnRES -> lnTrade Completed variable 6 of 7 Computing TE: lnCO2 -> lnRES Computing TE: lnUR -> lnRES Computing TE: lnURF -> lnRES Computing TE: lnURM -> lnRES Computing TE: lnPCGDP -> lnRES Computing TE: lnTrade -> lnRES Completed variable 7 of 7 No transfer entropy detected, using enhanced correlation-based network... v Transfer Entropy network created Network density: 0.048 Number of causal links: 2 TE threshold used: 0.0144 Conducting Transfer Entropy analysis... Variables for TE analysis: lnCO2, lnUR, lnURF, lnURM, lnPCGDP, lnTrade, lnRES Complete cases for TE analysis: 45 Calculating Transfer Entropy matrix... Computing TE: lnUR -> lnCO2 Computing TE: lnURF -> lnCO2 Computing TE: lnURM -> lnCO2 Computing TE: lnPCGDP -> lnCO2 Computing TE: lnTrade -> lnCO2 Computing TE: lnRES -> lnCO2 Completed variable 1 of 7 Computing TE: lnCO2 -> lnUR Computing TE: lnURF -> lnUR Computing TE: lnURM -> lnUR Computing TE: lnPCGDP -> lnUR Computing TE: lnTrade -> lnUR Computing TE: lnRES -> lnUR Completed variable 2 of 7 Computing TE: lnCO2 -> lnURF Computing TE: lnUR -> lnURF Computing TE: lnURM -> lnURF Computing TE: lnPCGDP -> lnURF Computing TE: lnTrade -> lnURF Computing TE: lnRES -> lnURF Completed variable 3 of 7 Computing TE: lnCO2 -> lnURM Computing TE: lnUR -> lnURM Computing TE: lnURF -> lnURM Computing TE: lnPCGDP -> lnURM Computing TE: lnTrade -> lnURM Computing TE: lnRES -> lnURM Completed variable 4 of 7 Computing TE: lnCO2 -> lnPCGDP Computing TE: lnUR -> lnPCGDP Computing TE: lnURF -> lnPCGDP Computing TE: lnURM -> lnPCGDP Computing TE: lnTrade -> lnPCGDP Computing TE: lnRES -> lnPCGDP Completed variable 5 of 7 Computing TE: lnCO2 -> lnTrade Computing TE: lnUR -> lnTrade Computing TE: lnURF -> lnTrade Computing TE: lnURM -> lnTrade Computing TE: lnPCGDP -> lnTrade Computing TE: lnRES -> lnTrade Completed variable 6 of 7 Computing TE: lnCO2 -> lnRES Computing TE: lnUR -> lnRES Computing TE: lnURF -> lnRES Computing TE: lnURM -> lnRES Computing TE: lnPCGDP -> lnRES Computing TE: lnTrade -> lnRES Completed variable 7 of 7 No edges above threshold, lowering threshold... v Transfer Entropy network created Network density: 0 Number of causal links: 0 TE threshold used: 0.0038 Creating instruments based on Transfer Entropy causal discovery... v Transfer entropy-based instruments created Country network density: 0.333 Creating composite instruments using factor analysis and scaling... v Composite instruments created using factor analysis approach Creating comprehensive network visualizations... No network to plot No country network to plot [ FAIL 1 | WARN 0 | SKIP 0 | PASS 68 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-visualizations.R:94:3'): Comprehensive network plots creation works ── Error in `f(...)`: Graphics API version mismatch Backtrace: ▆ 1. └─ManyIVsNets::create_comprehensive_network_plots(...) at test-visualizations.R:94:3 2. └─ManyIVsNets::plot_instrument_strength_comparison(...) 3. └─ggplot2::ggsave(...) 4. └─ggplot2 (local) dev(...) 5. └─ggplot2 (local) png_dev(..., res = dpi, units = "in") 6. └─ragg (local) f(...) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 68 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s/2s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE