* using log directory 'd:/RCompile/CRANincoming/R-devel/MacBehaviour.Rcheck'
* using R Under development (unstable) (2024-06-27 r86847 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MacBehaviour/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MacBehaviour' version '1.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] WARNING
Maintainer: 'Shixuan Li <shixuanli@cuhk.edu.hk>'

Insufficient package version (submitted: 1.1.0, existing: 1.2.2)

Possibly misspelled words in DESCRIPTION:
  LLM (7:135)
  OpenAI (7:217)

The Title field should be in title case. Current version is:
  'Behavioural studies of large language models'
In title case that is:
  'Behavioural Studies of Large Language Models'

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MacBehaviour' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'DRAFT.md' 'MacBehaviour.Rproj' 'R.zip' 'cran-comments.md'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] NOTE
baichuan_chat: no visible global function definition for 'modifyList'
claude_chat: no visible global function definition for 'modifyList'
experimentDesign: no visible global function definition for 'aggregate'
llama_chat: no visible global function definition for 'modifyList'
openai_chat: no visible global function definition for 'modifyList'
openai_completion: no visible global function definition for
  'modifyList'
run_baichuan: no visible global function definition for 'modifyList'
run_baichuan: no visible global function definition for
  'setTxtProgressBar'
run_claude: no visible global function definition for 'modifyList'
run_claude: no visible global function definition for
  'setTxtProgressBar'
run_gemini: no visible global function definition for 'modifyList'
run_gemini: no visible global function definition for
  'setTxtProgressBar'
run_llama: no visible global function definition for 'modifyList'
run_llama: no visible global function definition for
  'setTxtProgressBar'
run_openai: no visible global function definition for 'modifyList'
run_openai: no visible global function definition for
  'setTxtProgressBar'
Undefined global functions or variables:
  aggregate modifyList setTxtProgressBar
Consider adding
  importFrom("stats", "aggregate")
  importFrom("utils", "modifyList", "setTxtProgressBar")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'loadData.Rd':
  \examples lines wider than 100 characters:
     ExperimentItem=loadData(runList=df$Run,itemIDList=df$Item,conditionList=df$Condition,promptList = paste(df$TargetPrompt1,df$TargetPromp ... [TRUNCATED]

Rd file 'setKey.Rd':
  \examples lines wider than 100 characters:
     set_key(api_key="YOUR_API_KEY", api_url="https://api.openai.com/v1/chat/completions",model="gpt-3.5-turbo")

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'experimentDesign.Rd':
experimentDesign
  Code: function(data, session = 1, randomItem = FALSE, randomEvent =
                 FALSE)
  Docs: function(data, Step = 1, random = FALSE)
  Argument names in code not in docs:
    session randomItem randomEvent
  Argument names in docs not in code:
    Step random
  Mismatches in argument names:
    Position: 2 Code: session Docs: Step
    Position: 3 Code: randomItem Docs: random

Codoc mismatches from Rd file 'loadData.Rd':
loadData
  Code: function(runList, itemList, conditionList, promptList, header =
                 TRUE, eventList = NULL)
  Docs: function(runList, itemIDList, conditionList, promptList, header
                 = T)
  Argument names in code not in docs:
    itemList eventList
  Argument names in docs not in code:
    itemIDList
  Mismatches in argument names:
    Position: 2 Code: itemList Docs: itemIDList
  Mismatches in argument default values:
    Name: 'header' Code: TRUE Docs: T

Codoc mismatches from Rd file 'preCheck.Rd':
preCheck
  Code: function(data, checkToken = FALSE, systemPrompt = "", imgDetail
                 = "auto", version = "2023-06-01", ...)
  Docs: function(data, checkToken = F, systemPrompt = "", max_tokens =
                 500, temperature = 1, top_p = 1, n = 1)
  Argument names in code not in docs:
    imgDetail version ...
  Argument names in docs not in code:
    max_tokens temperature top_p n
  Mismatches in argument names:
    Position: 4 Code: imgDetail Docs: max_tokens
    Position: 5 Code: version Docs: temperature
    Position: 6 Code: ... Docs: top_p
  Mismatches in argument default values:
    Name: 'checkToken' Code: FALSE Docs: F

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'MacBehaviour-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: loadData
> ### Title: Step2: Load and format data
> ### Aliases: loadData
> 
> ### ** Examples
> 
> {
+ 
+ df <- data.frame(
+ Run = c(1, 2, 3, 4, 5, 6, 7, 8, 9),
+ Item = c(1,1, 1, 1, 1, 1, 1, 1, 2),
+ Condition = c(1, 2, 3, 4, 5, 6, 7, 8, 2),
+ TargetPrompt1 = c("The racing driver showed the torn overall...",
+                 "The racing driver showed the helpful mechanic...",
+                 "The report claimed that the racing driver showed the torn overall...",
+                 "The report claimed that the racing driver showed the helpful mechanic...",
+                 "The racing driver showed the torn overall...",
+                 "The racing driver showed the helpful mechanic...",
+                 "The report claimed that the racing driver showed the torn overall...",
+                 "The report claimed that the racing driver showed the helpful mechanic...",
+                 "The cricket player showed the ball..."),
+ TargetPrompt2 = c("The patient showed...",
+                  "The patient showed...",
+                  "The patient showed...",
+                  "The patient showed...",
+                  "The rumours alleged that the patient showed...",
+                  "The rumours alleged that the patient showed...",
+                  "The rumours alleged that the patient showed...",
+                  "The rumours alleged that the patient showed...",
+                  "The car mechanic showed...")
+ )
+ ExperimentItem=loadData(runList=df$Run,itemIDList=df$Item,conditionList=df$Condition,promptList = paste(df$TargetPrompt1,df$TargetPrompt2,sep="\n"))
+ print(ExperimentItem)
+ }
Error in loadData(runList = df$Run, itemIDList = df$Item, conditionList = df$Condition,  : 
  unused argument (itemIDList = df$Item)
Execution halted
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 2 WARNINGs, 3 NOTEs