* using log directory 'd:/RCompile/CRANincoming/R-devel/MSCsimtester.Rcheck'
* using R Under development (unstable) (2025-04-19 r88162 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'MSCsimtester/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MSCsimtester' version '1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Elizabeth Allman <e.allman@alaska.edu>'

Possibly misspelled words in DESCRIPTION:
  ACM (10:275)
  Bioinformat (10:300)
  Comput (10:286)
  os (10:174)

The Description field contains
  doi:10.1109/TCBB.2022.3177956
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'MSCsimtester' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found if() conditions comparing class() to string:
File 'MSCsimtester/R/MSCsimtester.R': if (class(popSizes) != "numeric") ...
File 'MSCsimtester/R/MSCsimtester.R': if (class(popSizes) != "numeric") ...
File 'MSCsimtester/R/MSCsimtester.R': if (class(x$Adtest) == "kSamples") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... WARNING
prepare_Rd: Couldn't find file REFERENCES.bib in package `MSCsimtester'
prepare_Rd: possibly non-existing or duplicated key(s) in bib file from package 'MSCsimtester':
    testing19

prepare_Rd: Failed to insert reference with key = testing19 from package = 'MSCsimtester'. Possible cause --- missing REFERENCES.bib in package 'MSCsimtester' or 'MSCsimtester' not installed.
prepare_Rd: possibly non-existing or duplicated key(s) in bib file from package 'MSCsimtester':
    simphy

prepare_Rd: Failed to insert reference with key = simphy from package = 'MSCsimtester'. Possible cause --- missing REFERENCES.bib in package 'MSCsimtester' or 'MSCsimtester' not installed.
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 3 NOTEs