* using log directory ‘/srv/hornik/tmp/CRAN_pretest/MRCV.Rcheck’ * using R Under development (unstable) (2024-10-17 r87242) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MRCV/DESCRIPTION’ ... OK * this is package ‘MRCV’ version ‘0.4-0’ * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Chris Bilder ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: MRCV (12:18, 14:27, 16:9, 17:66) MRCVs (5:10, 14:58) SRCV (13:47) CRAN repository db overrides: X-CRAN-Comment: Archived on 2022-06-20 as check problems were not corrected despite reminders. No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Natalie", family = "Koziol", role = "aut"), person(given = "Chris", family = "Bilder", role = c("aut", "cre"), email = "bilder@unl.edu")) as necessary. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MRCV’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Dependence on R version ‘4.3.1’ not with patchlevel 0 * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘README.txt’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] NOTE Found if() conditions comparing class() to string: File ‘MRCV/R/BLfour.R’: if ((class(data) != "data.frame") & (class(data) != "matrix")) ... File ‘MRCV/R/BLfour.R’: if ((class(create.dataframe) != "logical") & (create.dataframe != 1) & (create.dataframe != 0)) ... File ‘MRCV/R/BLfour.R’: if ((class(data) != "data.frame") & (class(data) != "matrix")) ... File ‘MRCV/R/BLfour.R’: if ((class(data) != "data.frame") & (class(data) != "matrix")) ... File ‘MRCV/R/BLfour.R’: if ((class(summary.data) != "logical") & (summary.data != 1) & (summary.data != 0)) ... File ‘MRCV/R/BLfour.R’: if ((class(plot.hist) != "logical") & (plot.hist != 1) & (plot.hist != 0)) ... File ‘MRCV/R/BLfour.R’: if ((class(print.status) != "logical") & (print.status != 1) & (print.status != 0)) ... File ‘MRCV/R/BLseven.R’: if (class(model) == "formula") ... File ‘MRCV/R/BLseven.R’: if ((class(data) != "data.frame") & (class(data) != "matrix")) ... File ‘MRCV/R/BLseven.R’: if (class(model) != "formula") ... File ‘MRCV/R/BLseven.R’: if ((class(model) != "formula") & (model != "spmi") & (model != "homogeneous") & (model != "w.main") & (model != "y.main") & (model != "wy.main") & (model != "saturated")) ... File ‘MRCV/R/BLseven.R’: if ((class(boot) != "logical") & (boot != 1) & (boot != 0)) ... File ‘MRCV/R/BLseven.R’: if ((class(print.status) != "logical") & (print.status != 1) & (print.status != 0)) ... File ‘MRCV/R/BLseven.R’: if (class(model) == "formula") ... File ‘MRCV/R/BLseven.R’: if (class(model) == "formula") ... File ‘MRCV/R/BLseven.R’: if (class(model) == "formula") ... File ‘MRCV/R/BLseven.R’: if (class(model.HA) == "formula") ... File ‘MRCV/R/BLseven.R’: if ((class(print.status) != "logical") & (print.status != 1) & (print.status != 0)) ... File ‘MRCV/R/BLseven.R’: if ((class(gof) != "logical") & (gof != 1) & (gof != 0)) ... File ‘MRCV/R/BLseven.R’: if ((class(model.HA) != "formula") & (model.HA != "saturated")) ... File ‘MRCV/R/BLseven.R’: if ((class(model.HA) != "formula") & (model.HA != "homogeneous") & (model.HA != "w.main") & (model.HA != "y.main") & (model.HA != "wy.main") & (model.HA != "saturated")) ... File ‘MRCV/R/BLseven.R’: if (class(model.HA) == "formula") ... File ‘MRCV/R/BLseven.R’: if (class(model.HA) == "formula") ... File ‘MRCV/R/BLseven.R’: if ((class(print.status) != "logical") & (print.status != 1) & (print.status != 0)) ... File ‘MRCV/R/BLseven.R’: if (class(model) == "formula") ... Use inherits() (or maybe is()) instead. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: item.response.table.Rd: tabular marginal.table.Rd: tabular residuals.genloglin.Rd: tabular Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s/2s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 5 NOTEs