downloading reverse dependencies ... downloading FADPclust_1.1.1.tar.gz ... ok downloading FunSurv_1.0.0.tar.gz ... ok downloading MJMbamlss_0.1.0.tar.gz ... ok downloading multifamm_0.1.1.tar.gz ... ok downloading squat_0.4.0.tar.gz ... ok downloading gmfamm_0.1.0.tar.gz ... ok installing dependencies ‘bamlss’, ‘fdacluster’, ‘fdasrvf’, ‘gghighlight’, ‘JMbayes2’, ‘MFPCA’, ‘MJMbamlss’, ‘reda’, ‘registr’, ‘roahd’, ‘sparseFLMM’ also installing the dependency ‘tolerance’ begin installing package ‘tolerance’ begin installing package ‘MFPCA’ begin installing package ‘reda’ begin installing package ‘sparseFLMM’ begin installing package ‘bamlss’ begin installing package ‘roahd’ begin installing package ‘JMbayes2’ begin installing package ‘gghighlight’ begin installing package ‘registr’ * installing *source* package ‘gghighlight’ ... ** this is package ‘gghighlight’ version ‘0.5.0’ ** package ‘gghighlight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghighlight) * installing *source* package ‘roahd’ ... ** this is package ‘roahd’ version ‘1.4.3’ ** package ‘roahd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roahd) * installing *source* package ‘MFPCA’ ... ** this is package ‘MFPCA’ version ‘1.3-11’ ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-15 -E checking for gcc... (cached) gcc-15 checking whether we are using the GNU C compiler... (cached) yes checking whether gcc-15 accepts -g... (cached) yes checking for gcc-15 option to accept ISO C89... (cached) none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for FFTW... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvXkpjF/R.INSTALL281241b08bb2e/MFPCA/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MFPCA-init.c -o MFPCA-init.o MFPCA-init.c:10:27: warning: missing braces around initializer [-Wmissing-braces] 10 | R_CMethodDef cMethods[] = { | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct2D.c -o dct2D.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D HAVE_FFTW -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dct3D.c -o dct3D.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o MFPCA.so MFPCA-init.o dct2D.o dct3D.o -lfftw3 -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvXkpjF/R.INSTALL281241b08bb2e/MFPCA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MFPCA/00new/MFPCA/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MFPCA) * installing *source* package ‘sparseFLMM’ ... ** this is package ‘sparseFLMM’ version ‘0.4.2’ ** package ‘sparseFLMM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseFLMM) * installing *source* package ‘tolerance’ ... ** this is package ‘tolerance’ version ‘3.0.0’ ** package ‘tolerance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tolerance) begin installing package ‘fdasrvf’ * installing *source* package ‘registr’ ... ** this is package ‘registr’ version ‘2.1.0’ ** package ‘registr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMysSEt/R.INSTALL281307625cd07/registr/src' g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expectedScores.cpp -o expectedScores.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expectedXi.cpp -o expectedXi.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c squareTheta.cpp -o squareTheta.o g++-15 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMysSEt/R.INSTALL281307625cd07/registr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-registr/00new/registr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (registr) * installing *source* package ‘reda’ ... ** this is package ‘reda’ version ‘0.5.5’ ** package ‘reda’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2oWKnV/R.INSTALL28123688c9a61/reda/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nonparametric_mcf.cpp -o nonparametric_mcf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c relativeRisk.cpp -o relativeRisk.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o reda.so RcppExports.o nonparametric_mcf.o relativeRisk.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2oWKnV/R.INSTALL28123688c9a61/reda/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reda/00new/reda/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reda) * installing *source* package ‘bamlss’ ... ** this is package ‘bamlss’ version ‘1.2-5’ ** package ‘bamlss’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLmXm0K/R.INSTALL281204893727f/bamlss/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bamlss_functions.c -o bamlss_functions.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bamlss_init.c -o bamlss_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnchol.c -o mvnchol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnmodchol.c -o mvnmodchol.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o bamlss.so bamlss_functions.o bamlss_init.o mvnchol.o mvnmodchol.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLmXm0K/R.INSTALL281204893727f/bamlss/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bamlss/00new/bamlss/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bamlss) begin installing package ‘MJMbamlss’ * installing *source* package ‘JMbayes2’ ... ** this is package ‘JMbayes2’ version ‘0.5-7’ ** package ‘JMbayes2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiV5NHj/R.INSTALL2812e35fbfb28/JMbayes2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_fit.cpp -o mcmc_fit.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o JMbayes2.so RcppExports.o init.o mcmc_fit.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiV5NHj/R.INSTALL2812e35fbfb28/JMbayes2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JMbayes2/00new/JMbayes2/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JMbayes2) * installing *source* package ‘MJMbamlss’ ... ** this is package ‘MJMbamlss’ version ‘0.1.0’ ** package ‘MJMbamlss’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1CQoxR/R.INSTALL285fa6183ac6a/MJMbamlss/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c JM.c -o JM.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c MJMbamlss_init.c -o MJMbamlss_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o MJMbamlss.so JM.o MJMbamlss_init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1CQoxR/R.INSTALL285fa6183ac6a/MJMbamlss/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MJMbamlss/00new/MJMbamlss/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MJMbamlss) * installing *source* package ‘fdasrvf’ ... ** this is package ‘fdasrvf’ version ‘2.4.0’ ** package ‘fdasrvf’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvwlCX7/R.INSTALL2850a31482cd3/fdasrvf/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperSRSF.cpp -o wrapperSRSF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperQMAP.cpp -o wrapperQMAP.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesian.cpp -o bayesian.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pair_align_functions_expomap.cpp -o pair_align_functions_expomap.o pair_align_functions_expomap.cpp: In function ‘arma::vec calcY(double, arma::vec)’: pair_align_functions_expomap.cpp:9:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 9 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp:14:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp: In function ‘Rcpp::NumericVector cuL2norm2(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:34:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 34 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 41 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp:46:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 46 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp: In function ‘double order_l2norm(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:70:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 70 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:77:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 77 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 84 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/DP.cpp -o fdasrsf/DP.o fdasrsf/DP.cpp: In function ‘double CostFn2(const double*, const double*, int, int, int, int, int, int, double, int)’: fdasrsf/DP.cpp:228:44: warning: ‘tmp_pen’ may be used uninitialized [-Wmaybe-uninitialized] 228 | E += (tmp*tmp + lam*tmp_pen); | ~~~^~~~~~~~ fdasrsf/DP.cpp:194:73: note: ‘tmp_pen’ was declared here 194 | double m = (j-l)/(double)(i-k), sqrtm = sqrt(m), E = 0, y, tmp, tmp_pen, ip, fp, q1dotq2; | ^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/dp_grid.cpp -o fdasrsf/dp_grid.o fdasrsf/dp_grid.cpp: In function ‘double dp_costs(double*, double*, int, double*, double*, int, int, double*, int*, int, double*, int*, int, double*, int*, double, size_t, int (*)[2])’: fdasrsf/dp_grid.cpp:32:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for ( i=0; i&)’: meanCenterClass.cpp:66:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ meanCenterClass.cpp:76:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medianCenterClass.cpp -o medianCenterClass.o medianCenterClass.cpp: In member function ‘virtual CenterType MedianCenterMethod::GetCenter(const arma::mat&, const arma::cube&, const std::shared_ptr&)’: medianCenterClass.cpp:66:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 66 | for (int i = halfPoint;i < numberOfPoints;++i) | ~~^~~~~~~~~~~~~~~~ medianCenterClass.cpp:76:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 76 | for (int k = i;k < numberOfPoints;++k) | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c medoidCenterClass.cpp -o medoidCenterClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c noWarpingClass.cpp -o noWarpingClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c normalizedL2DissimilarityClass.cpp -o normalizedL2DissimilarityClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pearsonDissimilarityClass.cpp -o pearsonDissimilarityClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c polyCenterClass.cpp -o polyCenterClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c shiftWarpingClass.cpp -o shiftWarpingClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/nloptr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utilityFunctions.cpp -o utilityFunctions.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fdacluster.so RcppExports.o affineWarpingClass.o baseDissimilarityClass.o baseOptimizerClass.o baseWarpingClass.o bobyqaOptimizerClass.o dilationWarpingClass.o kmaModelClass.o kmap.o kumaraswamyWarpingClass.o l2DissimilarityClass.o lowessCenterClass.o meanCenterClass.o medianCenterClass.o medoidCenterClass.o noWarpingClass.o normalizedL2DissimilarityClass.o pearsonDissimilarityClass.o polyCenterClass.o shiftWarpingClass.o utilityFunctions.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAPAZHR/R.INSTALL286c5596480e6/fdacluster/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fdacluster/00new/fdacluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdacluster) checking MFPCA_1.3-11.tar.gz ... checking FADPclust_1.1.1.tar.gz ... checking FunSurv_1.0.0.tar.gz ... checking MJMbamlss_0.1.0.tar.gz ... checking multifamm_0.1.1.tar.gz ... checking squat_0.4.0.tar.gz ... checking gmfamm_0.1.0.tar.gz ... Depends: Package: MFPCA Depends: R (>= 3.2.0), funData (>= 1.3-4) Imports: abind, foreach, irlba, Matrix(>= 1.5-0), methods, mgcv (>= 1.8-33), plyr, stats Timings: user system elapsed MFPCA 125.314 7.077 135.631 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 5 Check results summary: MFPCA ... OK rdepends_FADPclust ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_FunSurv ... OK rdepends_gmfamm ... OK rdepends_MJMbamlss ... OK rdepends_multifamm ... OK rdepends_squat ... OK Check results changes: Package: MJMbamlss Check: CRAN incoming feasibility Old result: NOTE Package: multifamm Check: CRAN incoming feasibility Old result: NOTE