downloading reverse dependencies ... downloading cgmanalysis_3.1.1.tar.gz ... ok downloading citationchaser_0.0.4.tar.gz ... ok downloading cp4p_0.3.6.tar.gz ... ok downloading geeasy_0.1.3.tar.gz ... ok downloading planningML_1.0.1.tar.gz ... ok downloading skyscapeR_1.0.0.tar.gz ... ok downloading ssev_0.1.0.tar.gz ... ok downloading TPEA_3.1.0.tar.gz ... ok downloading PSS.Health_1.1.4.tar.gz ... ok installing dependencies ‘easypower’, ‘ICC.Sample.Size’, ‘kappaSize’, ‘longpower’, ‘maditr’, ‘MESS’, ‘powerMediation’, ‘powerSurvEpi’, ‘presize’, ‘pwr2’, ‘swephR’, ‘WebPower’ also installing the dependency ‘PearsonDS’ begin installing package ‘PearsonDS’ begin installing package ‘maditr’ begin installing package ‘swephR’ begin installing package ‘easypower’ begin installing package ‘ICC.Sample.Size’ begin installing package ‘kappaSize’ begin installing package ‘longpower’ begin installing package ‘powerMediation’ begin installing package ‘powerSurvEpi’ begin installing package ‘pwr2’ begin installing package ‘MESS’ * installing *source* package ‘ICC.Sample.Size’ ... ** this is package ‘ICC.Sample.Size’ version ‘1.0’ ** package ‘ICC.Sample.Size’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ICC.Sample.Size) * installing *source* package ‘easypower’ ... ** this is package ‘easypower’ version ‘1.0.2’ ** package ‘easypower’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (easypower) * installing *source* package ‘pwr2’ ... ** this is package ‘pwr2’ version ‘1.0’ ** package ‘pwr2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pwr2) * installing *source* package ‘powerMediation’ ... ** this is package ‘powerMediation’ version ‘0.3.4’ ** package ‘powerMediation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (powerMediation) * installing *source* package ‘maditr’ ... ** this is package ‘maditr’ version ‘0.8.6’ ** package ‘maditr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maditr) * installing *source* package ‘powerSurvEpi’ ... ** this is package ‘powerSurvEpi’ version ‘0.1.5’ ** package ‘powerSurvEpi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (powerSurvEpi) * installing *source* package ‘longpower’ ... ** this is package ‘longpower’ version ‘1.0.27’ ** package ‘longpower’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (longpower) * installing *source* package ‘PearsonDS’ ... ** this is package ‘PearsonDS’ version ‘1.3.2’ ** package ‘PearsonDS’ successfully unpacked and MD5 sums checked ** using staged installation checking whether x86 FPU control code is needed... yes checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for usable _FPU_SETCW... yes checking for usable fpsetprec... no checking for usable _controlfp... no checking for usable _controlfp_s... no checking whether FPU control word can be manipulated by inline assembler... yes configure: creating ./config.status config.status: creating src/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdiQ15E/R.INSTALL2f45827594b963/PearsonDS/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Complex.c -o Complex.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DoubleDouble.c -o DoubleDouble.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21.c -o F21.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21DD.c -o F21DD.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21QD.c -o F21QD.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c QuadDouble.c -o QuadDouble.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pearson.c -o pearson.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pearsonIV.c -o pearsonIV.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o PearsonDS.so Complex.o DoubleDouble.o F21.o F21DD.o F21QD.o QuadDouble.o pearson.o pearsonIV.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdiQ15E/R.INSTALL2f45827594b963/PearsonDS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PearsonDS/00new/PearsonDS/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PearsonDS) begin installing package ‘WebPower’ * installing *source* package ‘kappaSize’ ... ** this is package ‘kappaSize’ version ‘1.2’ ** package ‘kappaSize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kappaSize) begin installing package ‘presize’ * installing *source* package ‘presize’ ... ** this is package ‘presize’ version ‘0.3.7’ ** package ‘presize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (presize) * installing *source* package ‘WebPower’ ... ** this is package ‘WebPower’ version ‘0.9.4’ ** package ‘WebPower’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (WebPower) * installing *source* package ‘swephR’ ... ** this is package ‘swephR’ version ‘0.3.2’ ** package ‘swephR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9HxctK/R.INSTALL2f45996f9c5458/swephR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c swephR.cpp -o swephR.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swedate.c -o libswe/swedate.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swehouse.c -o libswe/swehouse.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swejpl.c -o libswe/swejpl.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swemmoon.c -o libswe/swemmoon.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swemplan.c -o libswe/swemplan.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/sweph.c -o libswe/sweph.o libswe/sweph.c: In function ‘swe_get_library_path’: libswe/sweph.c:268:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 268 | if (dladdr((void *)swe_version, &dli) != 0) { | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swephlib.c -o libswe/swephlib.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swecl.c -o libswe/swecl.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./libswe/ -DSTRICT_R_HEADERS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libswe/swehel.c -o libswe/swehel.o ar rcs libswe.a libswe/swedate.o libswe/swehouse.o libswe/swejpl.o libswe/swemmoon.o libswe/swemplan.o libswe/sweph.o libswe/swephlib.o libswe/swecl.o libswe/swehel.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o swephR.so RcppExports.o swephR.o -L. -lswe -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9HxctK/R.INSTALL2f45996f9c5458/swephR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-swephR/00new/swephR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (swephR) * installing *source* package ‘MESS’ ... ** this is package ‘MESS’ version ‘0.6.0’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoMorS2/R.INSTALL2f459a286583a6/MESS/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c addtorows.cpp -o addtorows.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c bin.cpp -o bin.o bin.cpp: In function ‘Rcpp::List bin(Rcpp::NumericVector, double, double, bool)’: bin.cpp:45:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 45 | if (bin >= out.size()) { | ~~~~^~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c chi_square.cpp -o chi_square.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c cmd.cpp -o cmd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c colCumSum.cpp -o colCumSum.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c cor.cpp -o cor.o cor.cpp:86:3: warning: ‘/*’ within comment [-Wcomment] 86 | /* g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c cumsumbinning.cpp -o cumsumbinning.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c dcov.cpp -o dcov.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_correlation.cpp -o distance_correlation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c filldown.cpp -o filldown.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c hwe.cpp -o hwe.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c kstest.cpp -o kstest.o kstest.cpp: In function ‘Rcpp::List ks_cumtest(Rcpp::NumericVector, int, Rcpp::Nullable >)’: kstest.cpp:68:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 68 | for(int i = 0; i < K; i++) { | ~~^~~ kstest.cpp:79:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 79 | for(int i = 0; i < K; i++) { | ~~^~~ kstest.cpp:102:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 102 | for (int k = 0; k < N; k++) { | ~~^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c maximum_subarray.cpp -o maximum_subarray.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c mfastLm.cpp -o mfastLm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c pairwise.cpp -o pairwise.o pairwise.cpp:112:3: warning: ‘/*’ within comment [-Wcomment] 112 | /* g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c qdiag.cpp -o qdiag.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c quadforms.cpp -o quadforms.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c repmat.cpp -o repmat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c trace.cpp -o trace.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o MESS.so RcppExports.o addtorows.o bin.o chi_square.o cmd.o colCumSum.o cor.o cumsumbinning.o dcov.o distance_correlation.o filldown.o hwe.o kstest.o maximum_subarray.o mfastLm.o pairwise.o qdiag.o quadforms.o repmat.o trace.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoMorS2/R.INSTALL2f459a286583a6/MESS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MESS/00new/MESS/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MESS) checking MESS_0.6.0.tar.gz ... checking cgmanalysis_3.1.1.tar.gz ... checking citationchaser_0.0.4.tar.gz ... checking cp4p_0.3.6.tar.gz ... checking geeasy_0.1.3.tar.gz ... checking planningML_1.0.1.tar.gz ... checking skyscapeR_1.0.0.tar.gz ... checking ssev_0.1.0.tar.gz ... checking TPEA_3.1.0.tar.gz ... checking PSS.Health_1.1.4.tar.gz ... Depends: Package: MESS Depends: R (>= 4.1) Imports: MASS, Matrix, Rcpp, clipr, geepack, geeM, ggplot2, ggformula, glmnet, kinship2, methods, mvtnorm, parallel LinkingTo: Rcpp, RcppArmadillo, RcppParallel Timings: user system elapsed MESS 154.584 12.849 170.986 Results: Check status summary: ERROR NOTE OK Source packages 0 1 0 Reverse depends 1 0 8 Check results summary: MESS ... NOTE * checking CRAN incoming feasibility ... [6s/8s] NOTE rdepends_cgmanalysis ... OK rdepends_citationchaser ... OK rdepends_cp4p ... OK rdepends_geeasy ... OK rdepends_planningML ... ERROR * checking re-building of vignette outputs ... [5s/5s] ERROR rdepends_PSS.Health ... OK rdepends_skyscapeR ... OK rdepends_ssev ... OK rdepends_TPEA ... OK Check results changes: Package: citationchaser Check: CRAN incoming feasibility Old result: NOTE Package: cp4p Check: CRAN incoming feasibility Old result: NOTE Package: planningML Check: re-building of vignette outputs New result: ERROR Package: TPEA Check: CRAN incoming feasibility Old result: NOTE